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Mutant Information

Mutant NameFN3310-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3310-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 50
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr123259995G-AHETNON_SYNONYMOUS_CODINGLOC_Os01g41070
SBSChr134743488T-AHETNON_SYNONYMOUS_CODINGLOC_Os01g60060
SBSChr15896544G-CHomoNON_SYNONYMOUS_CODINGLOC_Os01g11040
SBSChr1019418877C-THomo
SBSChr105193610T-GHET
SBSChr107054395C-GHET
SBSChr109578608G-THET
SBSChr1113860394C-THET
SBSChr1121935866G-AHET
SBSChr1122380124A-GHET
SBSChr116401095C-AHET
SBSChr1219434984T-GHomoNON_SYNONYMOUS_CODINGLOC_Os12g32200
SBSChr1224071653A-THET
SBSChr212414148T-CHET
SBSChr219079096G-AHET
SBSChr219079097T-AHET
SBSChr230491525G-AHET
SBSChr232922750G-AHET
SBSChr234643205A-THET
SBSChr23819737A-CHET
SBSChr312171836A-THET
SBSChr313104423G-AHET
SBSChr32684805C-THET
SBSChr36998592G-CHET
SBSChr41594507T-CHET
SBSChr419179804T-CHomo
SBSChr423297364A-THET
SBSChr424719524C-AHET
SBSChr435100663A-GHomo
SBSChr44340146C-GHETNON_SYNONYMOUS_CODINGLOC_Os04g08150
SBSChr512331860T-CHET
SBSChr513003698T-GHET
SBSChr610015642C-THETNON_SYNONYMOUS_CODINGLOC_Os06g17290
SBSChr619665781G-AHET
SBSChr625069517A-GHETNON_SYNONYMOUS_CODINGLOC_Os06g41800
SBSChr714679127G-AHET
SBSChr715925622C-THETNON_SYNONYMOUS_CODINGLOC_Os07g27359
SBSChr716355650C-THETNON_SYNONYMOUS_CODINGLOC_Os07g28050
SBSChr716615543G-AHET
SBSChr720889535G-THomo
SBSChr727845483T-AHET
SBSChr72980084C-THET
SBSChr75253902T-CHETNON_SYNONYMOUS_CODINGLOC_Os07g09880
SBSChr78595415G-AHETNON_SYNONYMOUS_CODINGLOC_Os07g14990
SBSChr811835499C-GHomo
SBSChr818230221G-AHET
SBSChr84124019A-THET
SBSChr911583398C-THET
SBSChr912043411A-GHET
SBSChr99791393G-AHETNON_SYNONYMOUS_CODINGLOC_Os09g16030

Deletions: 20
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr71748911748921
DeletionChr43516653516672
DeletionChr12226698822669957
DeletionChr63799462379947210
DeletionChr752910015304000129992
DeletionChr7543962454396251
DeletionChr1548076454807662
DeletionChr714146831141468321
DeletionChr1214727440147274433
DeletionChr917490379174903856
DeletionChr418036757180367592
DeletionChr819173473191734752
DeletionChr31945563719455890253
DeletionChr821001308210013124
DeletionChr122353279223532801
DeletionChr723113417231134203LOC_Os07g38480
DeletionChr7242262062422623125
DeletionChr527217752272177553
DeletionChr334146411341464121
DeletionChr140448182404481897

Insertions: 2
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr1020126232201262332
InsertionChr1127282741272827422LOC_Os11g45090image

Inversions: 1
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr752689665306680

Translocations: 2
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr56365512Chr416098217
TranslocationChr1113147374Chr514831586LOC_Os11g22850