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Mutant Information

Mutant Name	FN3311-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3311-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 67

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15612443	G-A	HET
SBS	Chr1	1652802	C-A	HET	INTERGENIC
SBS	Chr1	18197278	G-A	HOMO	INTERGENIC
SBS	Chr1	37860530	G-A	HET	INTRON
SBS	Chr1	411410	T-C	HET
SBS	Chr1	43140227	A-G	HOMO	INTERGENIC
SBS	Chr10	11429641	G-A	Homo
SBS	Chr10	17568036	G-A	HET
SBS	Chr10	19769132	C-T	HET
SBS	Chr10	9272945	A-T	HET
SBS	Chr10	9272946	C-T	HET
SBS	Chr11	1062294	A-C	Homo
SBS	Chr11	1062294	A-C	HET	INTERGENIC
SBS	Chr11	10713474	T-G	Homo
SBS	Chr11	20095017	C-T	HET	INTERGENIC
SBS	Chr11	23223796	T-A	Homo
SBS	Chr11	26150586	A-G	HET	INTRON
SBS	Chr11	26150587	G-A	HET	INTRON
SBS	Chr11	5149227	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g09630
SBS	Chr12	15907003	G-A	HOMO	INTERGENIC
SBS	Chr12	17127908	G-A	HET
SBS	Chr12	20223113	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	21775916	C-A	Homo
SBS	Chr12	4576400	G-A	HET
SBS	Chr12	8103762	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g14250
SBS	Chr12	8169001	C-T	HET
SBS	Chr2	1492075	T-C	HET	INTERGENIC
SBS	Chr2	15082260	G-T	Homo
SBS	Chr2	20526845	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g34300
SBS	Chr2	24910501	G-A	HET
SBS	Chr2	284955	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g01490
SBS	Chr2	32525034	A-G	HET
SBS	Chr2	35739745	C-T	HOMO	INTRON
SBS	Chr2	8276402	A-G	HET
SBS	Chr2	9000566	T-C	HET
SBS	Chr2	9562838	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr3	22080501	C-T	HET	INTERGENIC
SBS	Chr3	23418959	G-A	HOMO	INTERGENIC
SBS	Chr3	24329132	C-T	Homo
SBS	Chr3	24329132	C-T	HOMO	INTERGENIC
SBS	Chr3	35282164	T-A	HOMO	INTERGENIC
SBS	Chr3	925479	T-A	HET
SBS	Chr4	21531164	G-A	HET	INTERGENIC
SBS	Chr4	2361885	C-A	HET	SYNONYMOUS_CODING
SBS	Chr4	24150069	C-T	Homo
SBS	Chr4	3113116	T-G	HET	INTERGENIC
SBS	Chr4	4495336	C-T	Homo
SBS	Chr4	4495336	C-T	HOMO	INTERGENIC
SBS	Chr4	5189162	C-T	Homo
SBS	Chr4	5189162	C-T	HOMO	INTERGENIC
SBS	Chr5	17301474	A-G	HET
SBS	Chr5	4845815	G-A	HET
SBS	Chr6	19860051	C-T	HOMO	INTERGENIC
SBS	Chr6	23934985	C-A	HET	INTERGENIC
SBS	Chr6	29862591	C-T	HET	INTERGENIC
SBS	Chr7	1430817	C-A	HET
SBS	Chr7	19788454	G-A	HET
SBS	Chr7	21145897	G-C	HET	UTR_5_PRIME
SBS	Chr8	10887889	T-A	HOMO	INTERGENIC
SBS	Chr8	21167471	G-A	HET
SBS	Chr8	27831968	G-A	HET
SBS	Chr8	4773395	G-A	HET	INTERGENIC
SBS	Chr8	4773396	T-A	HET	INTERGENIC
SBS	Chr8	6687178	A-G	HET
SBS	Chr9	1412031	G-A	HET
SBS	Chr9	16551172	C-T	HOMO	INTERGENIC
SBS	Chr9	4091276	C-T	HET	INTRON

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	657341	657343	2
Deletion	Chr3	2322188	2322189	1	LOC_Os03g04860
Deletion	Chr7	8519584	8519586	2
Deletion	Chr7	9446881	9446886	5
Deletion	Chr10	11547349	11547353	4
Deletion	Chr5	13648799	13648801	2
Deletion	Chr7	14152900	14152901	1
Deletion	Chr6	15247001	15271000	23999	4
Deletion	Chr2	15266974	15266977	3
Deletion	Chr12	15622001	15635000	12999	2
Deletion	Chr8	15843495	15843500	5
Deletion	Chr12	15976899	15976905	6
Deletion	Chr10	17584101	17584119	18
Deletion	Chr8	18552494	18552495	1	2
Deletion	Chr10	18627946	18627952	6	LOC_Os10g34890
Deletion	Chr5	18895369	18895374	5
Deletion	Chr7	19826377	19826379	2
Deletion	Chr2	20302149	20302150	1
Deletion	Chr1	20568250	20568270	20	LOC_Os01g36910
Deletion	Chr1	21356613	21356615	2	LOC_Os01g38140
Deletion	Chr6	21890412	21890417	5
Deletion	Chr3	26603520	26603521	1
Deletion	Chr1	29702117	29702122	5
Deletion	Chr1	34117933	34117935	2
Deletion	Chr1	41782582	41782589	7

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	12030010	12030010	1
Insertion	Chr2	9682858	9682858	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	10043623	10070079	LOC_Os09g16430
Inversion	Chr1	22238323	22242058
Inversion	Chr1	22238335	22242063
Inversion	Chr6	29424132	29993996	2
Inversion	Chr6	29424139	29994001	2

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1003520	Chr3	15238126	LOC_Os03g26690
Translocation	Chr2	3249550	Chr1	35549254	LOC_Os02g06500
Translocation	Chr2	3249552	Chr1	35550127	LOC_Os02g06500
Translocation	Chr8	4019874	Chr7	22860005	2
Translocation	Chr8	4019875	Chr7	22859719	2
Translocation	Chr10	8059531	Chr2	7279936	2
Translocation	Chr10	8082064	Chr2	7279933	2
Translocation	Chr9	20666147	Chr8	2513188	LOC_Os08g04920

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