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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22335814	C-A	HET
SBS	Chr1	29113817	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g50690
SBS	Chr10	11013244	C-T	HET
SBS	Chr10	17301510	G-A	HET
SBS	Chr10	17734461	A-G	Homo
SBS	Chr11	13085224	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g22750
SBS	Chr11	14183016	G-A	Homo
SBS	Chr11	17107979	T-A	Homo
SBS	Chr12	10805978	T-A	Homo
SBS	Chr12	17938886	A-T	Homo
SBS	Chr12	24675365	G-A	HET
SBS	Chr12	26434290	G-A	Homo
SBS	Chr12	27182052	G-C	HET
SBS	Chr12	4840790	G-A	HET
SBS	Chr2	14190451	G-A	HET
SBS	Chr2	24972938	A-T	Homo
SBS	Chr3	1003855	T-A	HET
SBS	Chr3	14415295	C-A	HET
SBS	Chr3	17391737	C-T	HET
SBS	Chr3	22239031	G-A	HET
SBS	Chr4	17399728	C-T	HET
SBS	Chr4	1920425	G-A	HET
SBS	Chr4	31551545	T-C	HET
SBS	Chr5	18069006	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g31090
SBS	Chr5	24970009	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g42980
SBS	Chr6	12997666	A-G	HET
SBS	Chr6	30395779	C-A	HET
SBS	Chr7	27628643	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g46320
SBS	Chr7	8307285	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g14560
SBS	Chr8	21750557	C-T	Homo
SBS	Chr8	22196183	C-T	HET
SBS	Chr8	22434053	T-A	HET
SBS	Chr8	26639977	A-G	HET
SBS	Chr8	26836157	A-C	HET
SBS	Chr8	27203616	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g43040

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	3443001	3479000	35999	4
Deletion	Chr12	4568866	4568871	5	LOC_Os12g08850
Deletion	Chr3	5234679	5234713	34
Deletion	Chr3	5856201	5856209	8
Deletion	Chr3	6606458	6606462	4
Deletion	Chr3	6690221	6690222	1	LOC_Os03g12600
Deletion	Chr10	9673001	9788000	114999	20
Deletion	Chr10	11087392	11087399	7
Deletion	Chr12	13045553	13045556	3
Deletion	Chr2	13153110	13153117	7
Deletion	Chr1	15119346	15119360	14	LOC_Os01g27120
Deletion	Chr11	24769455	24769470	15
Deletion	Chr8	25512001	25527000	14999	LOC_Os08g40310
Deletion	Chr2	33870097	33870098	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	16230816	16230816	1
Insertion	Chr11	21379748	21379749	2
Insertion	Chr4	3865689	3865694	6
Insertion	Chr8	22800889	22800889	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	5134528	5212044	2
Inversion	Chr12	9033579	9068586
Inversion	Chr11	28747911	28911398
Inversion	Chr11	28747915	28911400

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	1243	Chr2	162
Translocation	Chr11	3244975	Chr8	24662190
Translocation	Chr8	8733044	Chr6	22915387	LOC_Os08g14530
Translocation	Chr12	9057327	Chr4	19912680	LOC_Os12g15910
Translocation	Chr12	9068637	Chr4	19912461
Translocation	Chr12	13798169	Chr6	26048522	2
Translocation	Chr12	16204352	Chr4	3633936
Translocation	Chr6	22826962	Chr5	15579987
Translocation	Chr12	25725785	Chr2	9237541	2
Translocation	Chr11	25739388	Chr1	41115481

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