Search Results
| Mutant Information |
|---|
| Mutant Name | FN3323-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3323-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 38
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 19518680 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g35254 |
| SBS | Chr1 | 22605739 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g40070 |
| SBS | Chr1 | 28494884 | G-T | HET | ||
| SBS | Chr1 | 35774731 | T-C | HET | ||
| SBS | Chr2 | 31662280 | A-T | HET | ||
| SBS | Chr2 | 32924161 | A-G | Homo | ||
| SBS | Chr2 | 35867711 | C-T | Homo | STOP_GAINED | LOC_Os02g58710 |
| SBS | Chr3 | 11926612 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g21020 |
| SBS | Chr3 | 20288447 | A-T | HET | ||
| SBS | Chr3 | 21433495 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g38620 |
| SBS | Chr3 | 25044447 | G-A | Homo | ||
| SBS | Chr3 | 32033670 | G-A | HET | ||
| SBS | Chr3 | 33029682 | C-T | HET | ||
| SBS | Chr3 | 33029684 | T-G | HET | ||
| SBS | Chr3 | 35946200 | A-G | HET | ||
| SBS | Chr4 | 7563000 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g13550 |
| SBS | Chr4 | 13576601 | A-C | HET | ||
| SBS | Chr5 | 1098877 | G-A | HET | ||
| SBS | Chr5 | 5725651 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g10530 |
| SBS | Chr5 | 13818567 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os05g23990 |
| SBS | Chr5 | 25200322 | T-C | HET | ||
| SBS | Chr6 | 2609967 | C-A | HET | ||
| SBS | Chr6 | 7600775 | C-T | HET | ||
| SBS | Chr6 | 14631535 | G-A | HET | ||
| SBS | Chr6 | 16917794 | T-A | HET | ||
| SBS | Chr6 | 22426624 | G-C | HET | ||
| SBS | Chr7 | 2731201 | G-C | HET | ||
| SBS | Chr7 | 14896781 | G-A | HET | ||
| SBS | Chr8 | 230211 | T-A | HET | ||
| SBS | Chr8 | 1704427 | T-A | HET | ||
| SBS | Chr8 | 1760601 | G-C | HET | ||
| SBS | Chr8 | 3263539 | T-C | HET | ||
| SBS | Chr8 | 9186752 | T-G | HET | ||
| SBS | Chr9 | 9019823 | G-T | HET | ||
| SBS | Chr10 | 17039603 | G-T | HET | ||
| SBS | Chr12 | 4947526 | T-A | HET | ||
| SBS | Chr12 | 9001944 | C-T | HET | ||
| SBS | Chr12 | 13178504 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g23280 |
Deletions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 12339761 | 12339767 | 6 | |
| Deletion | Chr3 | 13106943 | 13107034 | 91 | |
| Deletion | Chr8 | 17061802 | 17061803 | 1 | LOC_Os08g28010 |
| Deletion | Chr9 | 17435531 | 17435537 | 6 | |
| Deletion | Chr4 | 17436802 | 17436803 | 1 | |
| Deletion | Chr4 | 21867896 | 21867906 | 10 | |
| Deletion | Chr9 | 22493234 | 22493313 | 79 | |
| Deletion | Chr1 | 29650284 | 29650481 | 197 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 23592357 | 23592358 | 2 | |
| Insertion | Chr4 | 2965047 | 2965047 | 1 | |
| Insertion | Chr5 | 11139890 | 11139890 | 1 | |
| Insertion | Chr6 | 10672860 | 10672860 | 1 | |
| Insertion | Chr11 | 23031529 | 23031550 | 22 | |
| Insertion | Chr12 | 4130499 | 4130499 | 1 | LOC_Os12g08100 |
No Inversion
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 1207 | Chr2 | 151 | |
| Translocation | Chr12 | 2283493 | Chr1 | 7156328 | |
| Translocation | Chr12 | 2400579 | Chr1 | 7156333 | |
| Translocation | Chr9 | 5651879 | Chr6 | 16283968 | |
| Translocation | Chr4 | 9394689 | Chr3 | 19296575 | |
| Translocation | Chr11 | 10925089 | Chr2 | 9805956 | |
| Translocation | Chr12 | 11006047 | Chr5 | 7925377 | |
| Translocation | Chr6 | 19245943 | Chr4 | 11585406 |