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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6969776	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g12650
SBS	Chr1	18297683	T-A	Homo
SBS	Chr1	41146087	G-A	HET
SBS	Chr2	20240385	G-A	Homo
SBS	Chr3	3059637	C-T	Homo
SBS	Chr3	7696383	C-A	HET
SBS	Chr3	12302053	T-G	HET
SBS	Chr3	14621758	G-A	Homo
SBS	Chr3	25577455	C-T	Homo
SBS	Chr4	18727225	C-T	Homo
SBS	Chr4	34191992	G-A	Homo
SBS	Chr5	745580	C-T	HET
SBS	Chr5	3752184	A-T	HET
SBS	Chr5	10298848	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g17910
SBS	Chr5	19407952	A-G	HET
SBS	Chr5	20932286	C-T	HET
SBS	Chr5	20932287	A-T	HET
SBS	Chr6	8501113	C-T	HET
SBS	Chr6	15090102	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g25830
SBS	Chr6	16526694	G-A	Homo
SBS	Chr6	27279489	T-C	HET
SBS	Chr6	28260392	C-T	HET
SBS	Chr7	13547977	A-T	HET
SBS	Chr7	17194896	C-T	HET
SBS	Chr7	25331729	A-G	HET
SBS	Chr7	27276651	G-A	HET
SBS	Chr8	13588661	G-A	Homo
SBS	Chr8	15794738	C-T	Homo
SBS	Chr8	25235789	T-C	HET
SBS	Chr9	20778511	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g36090
SBS	Chr10	1119436	G-C	HET
SBS	Chr11	4518931	C-T	HET
SBS	Chr11	17369290	T-C	Homo
SBS	Chr11	24871543	G-A	HET

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	5355763	5355766	3
Deletion	Chr9	5543219	5543226	7
Deletion	Chr10	8728114	8728115	1
Deletion	Chr6	8972001	9064000	91999	13
Deletion	Chr5	9025758	9025760	2
Deletion	Chr6	9076001	9295000	218999	36
Deletion	Chr6	9307001	9347000	39999	5
Deletion	Chr6	9358001	9481000	122999	12
Deletion	Chr12	9632098	9632103	5	LOC_Os12g16800
Deletion	Chr3	9712807	9712827	20
Deletion	Chr6	9770001	9956000	185999	29
Deletion	Chr6	9993001	10002000	8999	3
Deletion	Chr7	11125320	11125321	1
Deletion	Chr6	12289395	12289397	2
Deletion	Chr9	13098981	13098982	1
Deletion	Chr7	15497001	15533000	35999	3
Deletion	Chr7	17632100	17632179	79
Deletion	Chr9	19889001	20033000	143999	26
Deletion	Chr6	20829908	20829913	5
Deletion	Chr10	21781975	21781976	1
Deletion	Chr11	26728041	26728043	2
Deletion	Chr7	27462030	27462031	1	LOC_Os07g46020
Deletion	Chr5	27637927	27637929	2
Deletion	Chr1	32941068	32941070	2	LOC_Os01g57020
Deletion	Chr1	36191509	36191515	6

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	17459338	17459340	3
Insertion	Chr12	3017790	3017791	2
Insertion	Chr12	21038428	21038429	2
Insertion	Chr2	2360462	2360464	3
Insertion	Chr4	15002505	15002505	1
Insertion	Chr6	1296431	1296431	1
Insertion	Chr8	10714504	10714505	2
Insertion	Chr9	2067788	2067789	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr1	4251778	4370454
Inversion	Chr10	19384366	19944770
Inversion	Chr10	19384369	19944772

Translocations: 21

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	4517844	Chr2	7482386	LOC_Os11g08550
Translocation	Chr11	4517910	Chr2	7485545	2
Translocation	Chr4	5588400	Chr1	25576624
Translocation	Chr5	6452571	Chr2	6052115	LOC_Os05g11414
Translocation	Chr5	6909692	Chr4	18707581	2
Translocation	Chr5	7205328	Chr4	18707583	2
Translocation	Chr7	9602477	Chr3	13483740
Translocation	Chr5	11410420	Chr4	4973307	2
Translocation	Chr12	18707737	Chr3	4966462
Translocation	Chr11	19852825	Chr3	31201782
Translocation	Chr9	20769586	Chr4	20920155	2
Translocation	Chr9	20773929	Chr4	20918425	2
Translocation	Chr9	20773944	Chr7	26222113
Translocation	Chr9	20775959	Chr7	26222111	LOC_Os09g36080
Translocation	Chr10	21240909	Chr9	3932741
Translocation	Chr3	23730201	Chr1	34447930	2
Translocation	Chr12	24881283	Chr5	12422885	2
Translocation	Chr8	26327330	Chr3	23988952	LOC_Os08g41710
Translocation	Chr8	26328056	Chr1	4251793	LOC_Os08g41710
Translocation	Chr8	26492688	Chr5	21534624
Translocation	Chr4	29635210	Chr1	38797770

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