Search Results
Mutant Information |
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Mutant Name | FN3325-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3325-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 43
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 7728113 | C-G | HET | ||
SBS | Chr1 | 13574724 | T-A | HET | ||
SBS | Chr1 | 16463427 | A-G | HET | ||
SBS | Chr1 | 34800569 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g60160 |
SBS | Chr1 | 40694558 | T-C | HET | ||
SBS | Chr2 | 8982997 | C-T | HET | ||
SBS | Chr2 | 18599135 | C-T | HET | ||
SBS | Chr2 | 21542265 | G-T | HET | ||
SBS | Chr2 | 26020239 | A-T | HET | ||
SBS | Chr3 | 2703594 | C-A | HET | ||
SBS | Chr3 | 5411988 | A-G | HET | ||
SBS | Chr3 | 14674499 | G-A | Homo | ||
SBS | Chr3 | 18522964 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g32380 |
SBS | Chr3 | 30402498 | G-A | HET | ||
SBS | Chr3 | 35771373 | G-A | HET | ||
SBS | Chr4 | 17170376 | G-A | HET | ||
SBS | Chr4 | 26026166 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g43916 |
SBS | Chr5 | 12926684 | G-A | HET | ||
SBS | Chr5 | 18678345 | A-T | Homo | ||
SBS | Chr5 | 23543286 | G-C | HET | ||
SBS | Chr5 | 25111390 | G-T | HET | ||
SBS | Chr5 | 29257070 | C-A | HET | ||
SBS | Chr6 | 9929984 | A-G | HET | ||
SBS | Chr6 | 17145654 | C-T | HET | ||
SBS | Chr6 | 28338310 | A-C | Homo | ||
SBS | Chr7 | 4419406 | A-T | Homo | ||
SBS | Chr7 | 21067207 | G-A | HET | ||
SBS | Chr7 | 22748862 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g37910 |
SBS | Chr8 | 1432672 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g03130 |
SBS | Chr8 | 6948838 | G-T | Homo | ||
SBS | Chr8 | 11556196 | C-T | Homo | ||
SBS | Chr9 | 2941439 | G-A | HET | STOP_GAINED | LOC_Os09g06260 |
SBS | Chr9 | 11994910 | G-A | HET | ||
SBS | Chr9 | 12008396 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os09g20040 |
SBS | Chr9 | 19325337 | G-A | HET | ||
SBS | Chr9 | 19573170 | T-A | HET | ||
SBS | Chr10 | 71078 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os10g01060 |
SBS | Chr11 | 7856271 | C-A | HET | ||
SBS | Chr11 | 16202096 | G-T | Homo | ||
SBS | Chr11 | 20239947 | G-T | Homo | ||
SBS | Chr11 | 22382262 | A-G | HET | ||
SBS | Chr12 | 11386541 | T-G | HET | ||
SBS | Chr12 | 22382328 | G-C | HET |
Deletions: 17
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr12 | 3478227 | 3478228 | 1 | |
Deletion | Chr8 | 4767403 | 4767405 | 2 | |
Deletion | Chr9 | 7198748 | 7198750 | 2 | |
Deletion | Chr10 | 8381543 | 8381545 | 2 | |
Deletion | Chr3 | 9694977 | 9694989 | 12 | |
Deletion | Chr10 | 11777960 | 11777965 | 5 | |
Deletion | Chr5 | 16722325 | 16722330 | 5 | |
Deletion | Chr12 | 16850350 | 16850354 | 4 | |
Deletion | Chr12 | 23726560 | 23726585 | 25 | LOC_Os12g38620 |
Deletion | Chr11 | 23870354 | 23870367 | 13 | |
Deletion | Chr11 | 24200200 | 24200206 | 6 | |
Deletion | Chr2 | 26339452 | 26339458 | 6 | |
Deletion | Chr2 | 27075191 | 27075192 | 1 | |
Deletion | Chr6 | 27567498 | 27567504 | 6 | |
Deletion | Chr4 | 29818237 | 29818238 | 1 | |
Deletion | Chr1 | 34921719 | 34921720 | 1 | |
Deletion | Chr3 | 35032123 | 35032125 | 2 |
Insertions: 4
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr2 | 22192623 | 22192623 | 1 | |
Insertion | Chr7 | 23468619 | 23468619 | 1 | |
Insertion | Chr8 | 12235559 | 12235559 | 1 | |
Insertion | Chr12 | 19754378 | 19754379 | 2 |
Inversions: 4
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr10 | 897969 | 904388 | 2 |
Inversion | Chr10 | 898017 | 904392 | 2 |
Inversion | Chr6 | 13422504 | 13600419 | LOC_Os06g22990 |
Inversion | Chr6 | 13422509 | 13601462 | LOC_Os06g22990 |
Translocations: 7
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr8 | 10108407 | Chr6 | 18098133 | LOC_Os08g16490 |
Translocation | Chr7 | 14480942 | Chr2 | 20378261 | |
Translocation | Chr7 | 14486233 | Chr2 | 20378289 | |
Translocation | Chr9 | 14758858 | Chr3 | 1569844 | 2 |
Translocation | Chr12 | 22237325 | Chr1 | 13535648 | |
Translocation | Chr6 | 26160474 | Chr5 | 15039698 | LOC_Os06g43520 |
Translocation | Chr6 | 26160478 | Chr5 | 15033309 | LOC_Os06g43520 |