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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	658982	T-G	HET
SBS	Chr1	21993751	A-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g39110
SBS	Chr1	24557308	T-A	Homo
SBS	Chr1	25276457	T-C	Homo
SBS	Chr1	26932911	C-T	HET
SBS	Chr1	35346256	T-C	Homo
SBS	Chr1	41405156	C-A	HET
SBS	Chr2	11591536	C-A	Homo
SBS	Chr2	18491944	A-T	Homo
SBS	Chr2	26183293	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g43390
SBS	Chr2	31853953	C-T	HET
SBS	Chr3	22432392	T-C	HET
SBS	Chr3	27752737	C-T	Homo
SBS	Chr3	28811434	A-T	HET
SBS	Chr4	977118	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g02600
SBS	Chr4	1500985	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g03470
SBS	Chr4	5627484	G-A	HET
SBS	Chr4	6737560	T-C	HET
SBS	Chr4	27402153	C-T	Homo
SBS	Chr4	29025479	C-T	HET
SBS	Chr5	2695628	G-A	HET
SBS	Chr5	15955750	G-C	Homo
SBS	Chr6	17487534	G-A	HET
SBS	Chr7	2449083	G-A	Homo
SBS	Chr8	2813429	C-G	HET
SBS	Chr8	5082423	T-C	HET
SBS	Chr8	6108735	C-G	HET
SBS	Chr8	23487980	A-G	Homo
SBS	Chr8	25077069	G-A	HET
SBS	Chr8	28074225	G-T	HET
SBS	Chr8	28074226	C-T	HET
SBS	Chr9	13035725	C-T	HET
SBS	Chr10	6969033	G-A	HET	STOP_GAINED	LOC_Os10g12530
SBS	Chr10	10486704	A-G	HET
SBS	Chr11	11467671	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g19910
SBS	Chr11	20215042	G-A	Homo
SBS	Chr11	24926813	C-T	HET
SBS	Chr12	14232524	C-T	HET
SBS	Chr12	18206276	T-C	Homo

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	264924	264925	1
Deletion	Chr8	821001	852000	30999	2
Deletion	Chr9	5811535	5811542	7
Deletion	Chr2	6003831	6003845	14
Deletion	Chr2	7832366	7832370	4
Deletion	Chr5	9436268	9436269	1
Deletion	Chr3	11010638	11010639	1
Deletion	Chr11	11447989	11448011	22
Deletion	Chr11	11708002	11708016	14
Deletion	Chr9	14537001	14551000	13999	LOC_Os09g24440
Deletion	Chr8	14764613	14764626	13
Deletion	Chr9	15232221	15232224	3
Deletion	Chr11	16625400	16625401	1
Deletion	Chr3	18820239	18820241	2
Deletion	Chr7	19099183	19099184	1
Deletion	Chr9	19106567	19106584	17
Deletion	Chr12	19290317	19290319	2
Deletion	Chr11	20227323	20228175	852
Deletion	Chr9	21124249	21124250	1
Deletion	Chr11	21702208	21702212	4
Deletion	Chr3	22309001	22322000	12999	LOC_Os03g40160
Deletion	Chr3	23885053	23885069	16
Deletion	Chr3	25999107	25999108	1
Deletion	Chr1	28525966	28525970	4
Deletion	Chr2	34299814	34299826	12
Deletion	Chr1	42294881	42294882	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr7	26355811	26355812	2
Insertion	Chr8	23115315	23115315	1
Insertion	Chr3	28389567	28389574	8
Insertion	Chr5	10519222	10519222	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	24453950	24606686
Inversion	Chr3	24453958	24606693

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr8	16925925	Chr4	12566295
Translocation	Chr2	19208399	Chr1	35665940
Translocation	Chr8	23012350	Chr1	21631697
Translocation	Chr8	23015270	Chr4	29242134

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