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| Mutant Information |
|---|
| Mutant Name | FN3330-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3330-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17185187 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g31420 |
| SBS | Chr1 | 27445393 | T-C | Homo | ||
| SBS | Chr1 | 5268760 | C-A | HET | ||
| SBS | Chr10 | 4081463 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g07556 |
| SBS | Chr11 | 22687540 | C-T | HET | ||
| SBS | Chr12 | 20283242 | G-A | Homo | STOP_GAINED | LOC_Os12g33580 |
| SBS | Chr12 | 20283243 | C-A | Homo | ||
| SBS | Chr12 | 24590846 | T-G | HET | ||
| SBS | Chr12 | 7985107 | C-A | Homo | ||
| SBS | Chr3 | 24845738 | G-A | HET | ||
| SBS | Chr3 | 24946096 | A-G | HET | ||
| SBS | Chr4 | 1034336 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g02710 |
| SBS | Chr4 | 29933083 | C-T | HET | ||
| SBS | Chr5 | 17569160 | C-T | Homo | ||
| SBS | Chr5 | 23960285 | T-C | HET | ||
| SBS | Chr5 | 25647347 | G-T | HET | ||
| SBS | Chr6 | 27418695 | T-G | HET | ||
| SBS | Chr6 | 6602279 | G-A | Homo | ||
| SBS | Chr6 | 6602280 | C-A | Homo | ||
| SBS | Chr7 | 11297922 | G-A | HET | ||
| SBS | Chr7 | 13128710 | G-A | HET | ||
| SBS | Chr7 | 21276557 | G-C | HET | ||
| SBS | Chr9 | 12355924 | G-A | HET | ||
| SBS | Chr9 | 1343774 | G-T | HET | ||
| SBS | Chr9 | 3263406 | G-A | HET | STOP_GAINED | LOC_Os09g06820 |
| SBS | Chr9 | 5199142 | G-A | HET | ||
| SBS | Chr9 | 5991470 | C-G | HET |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 1076001 | 1076003 | 2 | |
| Deletion | Chr7 | 2389526 | 2389531 | 5 | |
| Deletion | Chr5 | 2405200 | 2405201 | 1 | |
| Deletion | Chr7 | 4275027 | 4275029 | 2 | |
| Deletion | Chr11 | 4836078 | 4836082 | 4 | |
| Deletion | Chr11 | 6154871 | 6154883 | 12 | |
| Deletion | Chr5 | 9031787 | 9031791 | 4 | LOC_Os05g15990 |
| Deletion | Chr12 | 11443496 | 11443499 | 3 | LOC_Os12g19620 |
| Deletion | Chr10 | 18607001 | 18619000 | 11999 | 2 |
| Deletion | Chr3 | 19375515 | 19375516 | 1 | |
| Deletion | Chr2 | 21451916 | 21451920 | 4 | |
| Deletion | Chr11 | 22265710 | 22265714 | 4 | |
| Deletion | Chr12 | 23881361 | 23881365 | 4 | |
| Deletion | Chr1 | 39880981 | 39880986 | 5 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 35483967 | 35483969 | 3 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 5869673 | 5953390 | LOC_Os09g10750 |
| Inversion | Chr9 | 5869687 | 5953399 | LOC_Os09g10750 |
| Inversion | Chr5 | 7389845 | 7988307 | |
| Inversion | Chr5 | 7389859 | 7988306 | |
| Inversion | Chr10 | 11341752 | 11342003 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 17323126 | Chr1 | 23664817 | |
| Translocation | Chr10 | 20130220 | Chr6 | 4158039 | |
| Translocation | Chr11 | 27253535 | Chr7 | 22208108 | |
| Translocation | Chr2 | 29415439 | Chr1 | 14947535 | LOC_Os02g48050 |