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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28471367	T-C	HET
SBS	Chr1	28962494	G-A	HET
SBS	Chr1	40962634	C-T	HET
SBS	Chr2	12945562	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g21780
SBS	Chr2	17441513	C-G	Homo
SBS	Chr2	18959720	A-C	Homo
SBS	Chr2	27764313	A-G	HET
SBS	Chr2	30621828	C-T	HET
SBS	Chr2	30621830	A-T	HET
SBS	Chr3	23123639	G-A	Homo
SBS	Chr3	28043010	G-A	Homo
SBS	Chr3	31922368	C-A	Homo
SBS	Chr5	17122177	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g29140
SBS	Chr6	3040163	G-A	HET
SBS	Chr6	3040164	A-T	HET
SBS	Chr6	26784460	C-G	HET
SBS	Chr7	7575511	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g13220
SBS	Chr7	10170509	C-T	HET
SBS	Chr7	21587235	G-A	HET
SBS	Chr8	12324413	C-T	Homo
SBS	Chr8	26741800	A-T	Homo
SBS	Chr9	5234439	T-C	HET
SBS	Chr9	10455630	T-C	Homo
SBS	Chr10	466363	G-T	HET
SBS	Chr11	16712827	C-A	HET
SBS	Chr11	16712828	C-T	HET
SBS	Chr12	13239727	G-C	Homo
SBS	Chr12	15951554	A-G	Homo

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	2387001	2397000	9999	LOC_Os07g05290
Deletion	Chr6	4615068	4615069	1
Deletion	Chr3	4884135	4884146	11
Deletion	Chr12	11454423	11454426	3
Deletion	Chr1	12053929	12053930	1
Deletion	Chr10	12777001	12804000	26999	5
Deletion	Chr3	15169001	15242000	72999	11
Deletion	Chr3	15245001	15290000	44999	6
Deletion	Chr7	16742803	16742807	4
Deletion	Chr8	20024001	20056000	31999	5
Deletion	Chr11	20625337	20625338	1	LOC_Os11g35160
Deletion	Chr4	25693601	25693606	5
Deletion	Chr11	28378741	28378753	12	LOC_Os11g47180

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	25879160	25879160	1
Insertion	Chr6	25699085	25699086	2
Insertion	Chr1	41615973	41615973	1
Insertion	Chr6	21857776	21857777	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	1337664	1475863	2
Inversion	Chr11	1337677	1475864	2
Inversion	Chr12	17508086	17508330
Inversion	Chr1	24788124	24788239	LOC_Os01g43350
Inversion	Chr5	27209435	27210091	LOC_Os05g47490

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	6451168	Chr2	6052360	LOC_Os05g11414
Translocation	Chr9	8228176	Chr5	8546781
Translocation	Chr8	11555809	Chr7	12605105
Translocation	Chr4	19147879	Chr1	9412339	2
Translocation	Chr8	20012071	Chr3	15296620	2
Translocation	Chr8	20056082	Chr3	15123793	LOC_Os08g32380
Translocation	Chr5	21820934	Chr4	11387198	2
Translocation	Chr5	21821127	Chr4	11387005	2
Translocation	Chr12	26995463	Chr2	10940031	2
Translocation	Chr3	29194440	Chr1	31269094

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