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| Mutant Information |
|---|
| Mutant Name | FN3341-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3341-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13688096 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g24294 |
| SBS | Chr1 | 19048234 | A-G | HET | ||
| SBS | Chr1 | 36852978 | C-T | HET | ||
| SBS | Chr10 | 22649587 | C-T | HET | ||
| SBS | Chr11 | 20940859 | A-T | Homo | ||
| SBS | Chr11 | 24342834 | C-T | HET | ||
| SBS | Chr11 | 27688157 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g45750 |
| SBS | Chr11 | 27688160 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g45750 |
| SBS | Chr12 | 25716842 | C-T | Homo | ||
| SBS | Chr2 | 1274533 | T-A | HET | ||
| SBS | Chr2 | 22632498 | T-A | Homo | ||
| SBS | Chr2 | 5430508 | G-T | HET | ||
| SBS | Chr2 | 575174 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g02050 |
| SBS | Chr4 | 1605980 | G-A | Homo | ||
| SBS | Chr4 | 20545409 | A-T | HET | ||
| SBS | Chr5 | 11206358 | A-T | Homo | ||
| SBS | Chr5 | 15653334 | C-T | Homo | ||
| SBS | Chr5 | 3770075 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g07130 |
| SBS | Chr6 | 15883059 | G-A | HET | ||
| SBS | Chr6 | 21781642 | C-A | HET | ||
| SBS | Chr7 | 29527292 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os07g49300 |
| SBS | Chr7 | 8438329 | C-T | Homo | ||
| SBS | Chr8 | 28436073 | T-A | Homo | ||
| SBS | Chr8 | 8696087 | G-A | HET | ||
| SBS | Chr9 | 19406545 | T-C | HET | STOP_LOST | LOC_Os09g32510 |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 9501360 | 9501361 | 1 | |
| Deletion | Chr7 | 10736487 | 10736492 | 5 | LOC_Os07g18120 |
| Deletion | Chr12 | 11979507 | 11979661 | 154 | |
| Deletion | Chr8 | 13418623 | 13418649 | 26 | LOC_Os08g22260 |
| Deletion | Chr6 | 17373121 | 17373123 | 2 | |
| Deletion | Chr7 | 17643347 | 17643349 | 2 | |
| Deletion | Chr5 | 19210001 | 19272000 | 61999 | 10 |
| Deletion | Chr6 | 23757001 | 23792000 | 34999 | 7 |
| Deletion | Chr2 | 26268167 | 26268173 | 6 | |
| Deletion | Chr2 | 27691707 | 27691712 | 5 |
Insertions: 5
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 20142050 | 20845255 | |
| Inversion | Chr9 | 20142054 | 20845260 | |
| Inversion | Chr2 | 23612340 | 23689632 | 2 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 12452442 | Chr3 | 13352144 | LOC_Os10g24310 |
| Translocation | Chr7 | 18737484 | Chr3 | 2479543 | 2 |
| Translocation | Chr7 | 19416104 | Chr3 | 1604013 | |
| Translocation | Chr8 | 25509023 | Chr3 | 17936219 | LOC_Os08g40290 |