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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32597701	T-A	HET
SBS	Chr2	6504114	A-C	HET
SBS	Chr2	24066718	A-G	Homo
SBS	Chr3	16195498	A-G	Homo
SBS	Chr3	20100648	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g36239
SBS	Chr4	10587367	G-A	HET
SBS	Chr4	11340613	A-G	Homo
SBS	Chr4	11462650	A-G	Homo
SBS	Chr4	16004685	T-A	HET
SBS	Chr4	20223361	T-A	HET
SBS	Chr4	24974812	A-T	HET
SBS	Chr4	34182906	C-T	Homo
SBS	Chr5	14516765	G-T	Homo
SBS	Chr5	18325539	C-A	Homo
SBS	Chr6	115349	C-T	HET
SBS	Chr6	9115203	T-G	Homo
SBS	Chr7	6042191	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g11000
SBS	Chr7	12478934	T-A	HET
SBS	Chr7	21000195	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g35050
SBS	Chr7	29471494	G-T	HET	STOP_GAINED	LOC_Os07g49210
SBS	Chr8	8211504	C-T	HET
SBS	Chr8	17922706	A-T	HET
SBS	Chr9	3351554	G-A	HET
SBS	Chr10	4396282	A-G	Homo
SBS	Chr11	12755162	T-C	Homo
SBS	Chr11	16494488	C-T	Homo
SBS	Chr11	16915258	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g29180
SBS	Chr12	9437285	T-A	HET
SBS	Chr12	15674749	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g26750
SBS	Chr12	20437158	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g33910

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	476109	476115	6
Deletion	Chr5	1824961	1824962	1
Deletion	Chr9	3765077	3765083	6
Deletion	Chr4	5827542	5827549	7	LOC_Os04g10720
Deletion	Chr10	5877116	5877132	16
Deletion	Chr8	6224738	6224742	4
Deletion	Chr11	11473619	11473620	1	LOC_Os11g19930
Deletion	Chr2	11676203	11676214	11
Deletion	Chr11	14229418	14229426	8	LOC_Os11g24990
Deletion	Chr3	14319541	14319546	5
Deletion	Chr2	15269774	15269781	7
Deletion	Chr4	15363939	15363942	3
Deletion	Chr5	15580707	15580713	6
Deletion	Chr1	16447750	16447753	3
Deletion	Chr1	16469056	16469059	3	LOC_Os01g29390
Deletion	Chr11	17525409	17525412	3
Deletion	Chr11	20290540	20290549	9
Deletion	Chr4	22040984	22040985	1
Deletion	Chr11	23033534	23033536	2
Deletion	Chr3	24546594	24546604	10
Deletion	Chr3	24900361	24900362	1
Deletion	Chr4	24922758	24922765	7
Deletion	Chr6	28468699	28468705	6	LOC_Os06g46910
Deletion	Chr6	29107110	29107111	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr6	13454925	13454927	3
Insertion	Chr2	370039	370039	1
Insertion	Chr8	23542876	23542877	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	7101508	7103722	2
Inversion	Chr10	7101858	7103729	2
Inversion	Chr4	34030217	34117288	LOC_Os04g57110
Inversion	Chr4	34030225	34117312	LOC_Os04g57110

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	7101517	Chr4	6091291	LOC_Os10g12730
Translocation	Chr10	7101854	Chr4	6091290
Translocation	Chr11	7874268	Chr2	11103313

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