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| Mutant Information |
|---|
| Mutant Name | FN3359-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3359-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 22857471 | C-A | Homo | ||
| SBS | Chr10 | 11072857 | C-T | HET | ||
| SBS | Chr10 | 7209217 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g13350 |
| SBS | Chr11 | 17558313 | T-C | HET | ||
| SBS | Chr12 | 10686597 | A-T | HET | ||
| SBS | Chr12 | 10844427 | G-A | Homo | ||
| SBS | Chr12 | 8262360 | C-T | HET | ||
| SBS | Chr2 | 29598558 | G-A | HET | ||
| SBS | Chr2 | 31109537 | C-A | HET | ||
| SBS | Chr2 | 4614778 | T-C | HET | ||
| SBS | Chr3 | 15042110 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g26310 |
| SBS | Chr3 | 17768740 | G-T | HET | ||
| SBS | Chr3 | 22843833 | C-A | HET | ||
| SBS | Chr3 | 28806025 | T-C | Homo | ||
| SBS | Chr3 | 33122697 | C-T | Homo | ||
| SBS | Chr4 | 9329273 | C-T | Homo | ||
| SBS | Chr5 | 16345760 | C-T | HET | ||
| SBS | Chr5 | 17739187 | G-C | Homo | ||
| SBS | Chr7 | 10608673 | C-T | HET | ||
| SBS | Chr7 | 15662125 | A-T | HET | ||
| SBS | Chr8 | 14303307 | G-A | HET | ||
| SBS | Chr8 | 2031288 | G-T | HET | ||
| SBS | Chr9 | 16955492 | G-A | HET | ||
| SBS | Chr9 | 17891017 | C-T | HET | ||
| SBS | Chr9 | 17891018 | C-T | HET | ||
| SBS | Chr9 | 22609784 | G-T | HET |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 369412 | 369415 | 3 | LOC_Os05g01620 |
| Deletion | Chr5 | 5861912 | 5861932 | 20 | |
| Deletion | Chr11 | 6205606 | 6205614 | 8 | |
| Deletion | Chr6 | 6471073 | 6471074 | 1 | |
| Deletion | Chr1 | 9493001 | 9509000 | 15999 | 3 |
| Deletion | Chr5 | 10542207 | 10542213 | 6 | |
| Deletion | Chr5 | 14124343 | 14124348 | 5 | |
| Deletion | Chr6 | 14979555 | 14979571 | 16 | |
| Deletion | Chr12 | 16186821 | 16186822 | 1 | |
| Deletion | Chr5 | 17739375 | 17739376 | 1 | |
| Deletion | Chr1 | 27180796 | 27180812 | 16 | |
| Deletion | Chr6 | 28967534 | 28967541 | 7 | LOC_Os06g47870 |
| Deletion | Chr2 | 29393210 | 29393219 | 9 | |
| Deletion | Chr2 | 30292001 | 30331000 | 38999 | 9 |
| Deletion | Chr1 | 35672874 | 35672876 | 2 | LOC_Os01g61650 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 14811315 | 14811315 | 1 | LOC_Os10g28460 |
| Insertion | Chr12 | 10157173 | 10157173 | 1 | |
| Insertion | Chr12 | 11689896 | 11689896 | 1 | |
| Insertion | Chr4 | 13731486 | 13731486 | 1 | |
| Insertion | Chr8 | 16899775 | 16899809 | 35 | |
| Insertion | Chr8 | 5415375 | 5415425 | 51 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 11632817 | 12161796 | LOC_Os01g20860 |
| Inversion | Chr1 | 11632824 | 12161813 | LOC_Os01g20860 |
| Inversion | Chr12 | 11671698 | 11837590 | |
| Inversion | Chr12 | 11671702 | 11842203 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 18670212 | Chr7 | 11854541 | LOC_Os11g31810 |
| Translocation | Chr8 | 18843121 | Chr4 | 17722474 | 2 |
| Translocation | Chr3 | 23252596 | Chr2 | 9805487 | |
| Translocation | Chr4 | 24962297 | Chr1 | 33582427 | |
| Translocation | Chr4 | 26012089 | Chr3 | 25810827 | 2 |