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Mutant Information

Variant Information

Single base substitutions: 46

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	814129	C-T	HET
SBS	Chr1	19608844	A-G	Homo
SBS	Chr1	34740550	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g60060
SBS	Chr1	35731286	C-T	Homo
SBS	Chr1	36413971	T-A	HET
SBS	Chr1	36413972	C-T	HET
SBS	Chr1	40678994	T-C	HET
SBS	Chr2	6615250	T-A	HET
SBS	Chr2	8096534	A-T	HET
SBS	Chr2	30497438	C-T	HET
SBS	Chr3	5254432	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g10300
SBS	Chr3	7179528	C-T	HET
SBS	Chr3	29468234	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g51520
SBS	Chr4	6809474	G-A	HET
SBS	Chr5	8345233	T-C	HET
SBS	Chr5	12320098	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g20950
SBS	Chr5	20874200	T-C	HET
SBS	Chr5	20878085	G-A	HET
SBS	Chr5	21132329	G-A	HET
SBS	Chr5	28881434	G-A	Homo
SBS	Chr5	29503581	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g51460
SBS	Chr6	326151	C-T	HET
SBS	Chr6	4483918	T-C	HET
SBS	Chr6	8284243	G-A	HET
SBS	Chr6	11164027	C-T	Homo
SBS	Chr6	13451574	C-T	HET
SBS	Chr6	21359061	G-A	HET
SBS	Chr6	26621253	G-A	HET
SBS	Chr6	29486981	T-A	HET
SBS	Chr7	578085	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g01940
SBS	Chr7	3987355	T-A	Homo
SBS	Chr7	19215266	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g32310
SBS	Chr7	21565052	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g36060
SBS	Chr7	22457573	C-T	HET
SBS	Chr7	24005781	C-A	HET
SBS	Chr8	6950254	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g11850
SBS	Chr8	14713025	A-G	HET
SBS	Chr9	19252001	C-T	HET
SBS	Chr10	16534	C-T	HET
SBS	Chr10	6365661	G-T	HET
SBS	Chr10	9766594	C-T	HET
SBS	Chr11	15229491	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g26590
SBS	Chr11	21431632	C-T	HET
SBS	Chr12	7301899	G-A	Homo
SBS	Chr12	25455213	G-A	Homo
SBS	Chr12	27180281	C-T	HET

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	1	153000	152999	25
Deletion	Chr7	397001	488000	90999	17
Deletion	Chr1	5483190	5483191	1
Deletion	Chr4	6222618	6222625	7
Deletion	Chr3	8190469	8190475	6
Deletion	Chr11	9739486	9739489	3
Deletion	Chr8	10480847	10480849	2
Deletion	Chr6	11163272	11163283	11
Deletion	Chr3	14267157	14267160	3
Deletion	Chr4	14901222	14901235	13
Deletion	Chr2	16030669	16030671	2
Deletion	Chr3	16410504	16410513	9
Deletion	Chr3	17390556	17390563	7
Deletion	Chr1	17972626	17972633	7
Deletion	Chr11	19498192	19498193	1
Deletion	Chr9	22312011	22312021	10	LOC_Os09g38840
Deletion	Chr9	22694988	22694997	9
Deletion	Chr3	23685734	23685737	3

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	6331862	6331862	1
Insertion	Chr4	23301401	23301402	2
Insertion	Chr11	8300268	8300269	2
Insertion	Chr2	13709743	13709743	1	LOC_Os02g23820
Insertion	Chr6	8656151	8656174	24
Insertion	Chr11	19416072	19416072	1
Insertion	Chr11	19416435	19416436	2
Insertion	Chr12	8264472	8264474	3

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	2412331	2519833	2
Inversion	Chr6	4181437	4523017	2
Inversion	Chr6	4181447	4524642	2
Inversion	Chr6	4181448	4523020	2
Inversion	Chr9	9661948	9954134	LOC_Os09g15830
Inversion	Chr8	27300291	27535885	2
Inversion	Chr8	27300321	27535893	2
Inversion	Chr8	28120780	28203172	LOC_Os08g44750

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	4244177	Chr2	6526413
Translocation	Chr11	15950035	Chr1	14847997
Translocation	Chr12	18707492	Chr5	12102772	2
Translocation	Chr5	19391900	Chr2	17106255
Translocation	Chr8	19479857	Chr4	35498773
Translocation	Chr11	22995419	Chr7	21960411
Translocation	Chr11	27282751	Chr10	17466608	LOC_Os11g45090

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