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| Mutant Information |
|---|
| Mutant Name | FN3365-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3365-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1243354 | C-A | Homo | ||
| SBS | Chr1 | 15696440 | G-T | HET | ||
| SBS | Chr1 | 17410373 | C-T | HET | ||
| SBS | Chr1 | 33223239 | G-T | Homo | ||
| SBS | Chr1 | 34270649 | G-T | Homo | ||
| SBS | Chr11 | 21022515 | G-A | HET | ||
| SBS | Chr11 | 22020779 | A-C | Homo | ||
| SBS | Chr11 | 22020782 | A-T | Homo | ||
| SBS | Chr12 | 1310217 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os12g03370 |
| SBS | Chr12 | 15046311 | A-T | HET | ||
| SBS | Chr12 | 23475883 | G-A | HET | ||
| SBS | Chr12 | 25066007 | C-G | HET | ||
| SBS | Chr2 | 34199850 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os02g55870 |
| SBS | Chr2 | 34199851 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g55870 |
| SBS | Chr3 | 17585917 | T-A | Homo | ||
| SBS | Chr3 | 6860041 | G-C | HET | ||
| SBS | Chr4 | 29325463 | C-T | HET | ||
| SBS | Chr4 | 6748207 | C-T | HET | ||
| SBS | Chr4 | 6804520 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g12320 |
| SBS | Chr6 | 6065967 | C-T | Homo | ||
| SBS | Chr7 | 27247422 | C-A | Homo | ||
| SBS | Chr7 | 8050968 | T-C | HET |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 219564 | 219579 | 15 | |
| Deletion | Chr10 | 2135644 | 2135649 | 5 | |
| Deletion | Chr2 | 5449191 | 5449192 | 1 | |
| Deletion | Chr10 | 9736854 | 9736867 | 13 | LOC_Os10g19130 |
| Deletion | Chr8 | 10580779 | 10580781 | 2 | |
| Deletion | Chr7 | 11185773 | 11185795 | 22 | |
| Deletion | Chr5 | 11444446 | 11444447 | 1 | |
| Deletion | Chr4 | 15390200 | 15390201 | 1 | |
| Deletion | Chr10 | 19591247 | 19591248 | 1 | |
| Deletion | Chr5 | 20680832 | 20680849 | 17 | |
| Deletion | Chr3 | 23252973 | 23252976 | 3 | |
| Deletion | Chr3 | 23878924 | 23878930 | 6 | |
| Deletion | Chr12 | 25124939 | 25124946 | 7 | |
| Deletion | Chr11 | 25567001 | 25632000 | 64999 | 12 |
| Deletion | Chr12 | 27299635 | 27299638 | 3 | |
| Deletion | Chr1 | 28050285 | 28050297 | 12 | |
| Deletion | Chr7 | 28199783 | 28199787 | 4 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 21506326 | 21506344 | 19 | |
| Insertion | Chr10 | 3387707 | 3387708 | 2 | |
| Insertion | Chr5 | 12569228 | 12569233 | 6 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 19964278 | 20391608 | 2 |
| Inversion | Chr11 | 20076730 | 20390124 | |
| Inversion | Chr11 | 21976138 | 22060482 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 15008581 | Chr1 | 12925592 | |
| Translocation | Chr12 | 25146232 | Chr11 | 5833772 | 2 |