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Mutant Information

Mutant NameFN3370-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3370-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 23
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr11234380C-THomo
SBSChr116869155T-AHET
SBSChr139400565C-AHET
SBSChr10160901G-AHET
SBSChr105384461G-AHomo
SBSChr1212176268A-THomoNON_SYNONYMOUS_CODINGLOC_Os12g21660
SBSChr232124769A-GHET
SBSChr310947490A-GHETNON_SYNONYMOUS_CODINGLOC_Os03g19462
SBSChr333639835A-GHET
SBSChr410822928C-THomo
SBSChr415526468C-THET
SBSChr422160467C-THomo
SBSChr48191958T-AHomoSTOP_GAINEDLOC_Os04g14600
SBSChr520330987A-GHomo
SBSChr524392610G-AHomoNON_SYNONYMOUS_CODINGLOC_Os05g41690
SBSChr62182687A-GHomo
SBSChr725312166A-THET
SBSChr81389143G-AHomo
SBSChr817645983T-AHomo
SBSChr820982599C-THET
SBSChr84798600G-AHET
SBSChr912111779A-THET
SBSChr95754444G-AHET

Deletions: 15
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr11616272161628210LOC_Os01g03830
DeletionChr113376227337624316LOC_Os11g06880
DeletionChr4819157481915773
DeletionChr8891503389150385
DeletionChr59176532917654311
DeletionChr7999498999949945
DeletionChr711502649115026523
DeletionChr111211851212118700188
DeletionChr1114134568141345702
DeletionChr817100848171008491
DeletionChr217801431178014321
DeletionChr419793101197931043
DeletionChr420584837205848392
DeletionChr231851001319050005399910
DeletionChr235361668353616691

Insertions: 9
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr11120786731207869220
InsertionChr11177388031773883836
InsertionChr4236525823652581
InsertionChr425269882252698832
InsertionChr470334970336618
InsertionChr726948334269483352
InsertionChr8337901633790194
InsertionChr8680825068082512
InsertionChr9506529850652981

No Inversion

Translocations: 10
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr91976917Chr7132657032
TranslocationChr126978592Chr714222932LOC_Os12g12664
TranslocationChr714222947Chr5284769792
TranslocationChr514575787Chr28032374
TranslocationChr1016820917Chr141587105
TranslocationChr1019026926Chr3133316
TranslocationChr819674618Chr233131782
TranslocationChr819674624Chr233019022
TranslocationChr231849089Chr135054737
TranslocationChr231850100Chr135054738