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Mutant Information |
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Mutant Name | FN3370-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3370-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 23
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 1234380 | C-T | Homo | ||
SBS | Chr1 | 16869155 | T-A | HET | ||
SBS | Chr1 | 39400565 | C-A | HET | ||
SBS | Chr10 | 160901 | G-A | HET | ||
SBS | Chr10 | 5384461 | G-A | Homo | ||
SBS | Chr12 | 12176268 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g21660 |
SBS | Chr2 | 32124769 | A-G | HET | ||
SBS | Chr3 | 10947490 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g19462 |
SBS | Chr3 | 33639835 | A-G | HET | ||
SBS | Chr4 | 10822928 | C-T | Homo | ||
SBS | Chr4 | 15526468 | C-T | HET | ||
SBS | Chr4 | 22160467 | C-T | Homo | ||
SBS | Chr4 | 8191958 | T-A | Homo | STOP_GAINED | LOC_Os04g14600 |
SBS | Chr5 | 20330987 | A-G | Homo | ||
SBS | Chr5 | 24392610 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g41690 |
SBS | Chr6 | 2182687 | A-G | Homo | ||
SBS | Chr7 | 25312166 | A-T | HET | ||
SBS | Chr8 | 1389143 | G-A | Homo | ||
SBS | Chr8 | 17645983 | T-A | Homo | ||
SBS | Chr8 | 20982599 | C-T | HET | ||
SBS | Chr8 | 4798600 | G-A | HET | ||
SBS | Chr9 | 12111779 | A-T | HET | ||
SBS | Chr9 | 5754444 | G-A | HET |
Deletions: 15
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr1 | 1616272 | 1616282 | 10 | LOC_Os01g03830 |
Deletion | Chr11 | 3376227 | 3376243 | 16 | LOC_Os11g06880 |
Deletion | Chr4 | 8191574 | 8191577 | 3 | |
Deletion | Chr8 | 8915033 | 8915038 | 5 | |
Deletion | Chr5 | 9176532 | 9176543 | 11 | |
Deletion | Chr7 | 9994989 | 9994994 | 5 | |
Deletion | Chr7 | 11502649 | 11502652 | 3 | |
Deletion | Chr11 | 12118512 | 12118700 | 188 | |
Deletion | Chr11 | 14134568 | 14134570 | 2 | |
Deletion | Chr8 | 17100848 | 17100849 | 1 | |
Deletion | Chr2 | 17801431 | 17801432 | 1 | |
Deletion | Chr4 | 19793101 | 19793104 | 3 | |
Deletion | Chr4 | 20584837 | 20584839 | 2 | |
Deletion | Chr2 | 31851001 | 31905000 | 53999 | 10 |
Deletion | Chr2 | 35361668 | 35361669 | 1 |
Insertions: 9
No Inversion
Translocations: 10
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 1976917 | Chr7 | 13265703 | 2 |
Translocation | Chr12 | 6978592 | Chr7 | 14222932 | LOC_Os12g12664 |
Translocation | Chr7 | 14222947 | Chr5 | 28476979 | 2 |
Translocation | Chr5 | 14575787 | Chr2 | 8032374 | |
Translocation | Chr10 | 16820917 | Chr1 | 41587105 | |
Translocation | Chr10 | 19026926 | Chr3 | 133316 | |
Translocation | Chr8 | 19674618 | Chr2 | 3313178 | 2 |
Translocation | Chr8 | 19674624 | Chr2 | 3301902 | 2 |
Translocation | Chr2 | 31849089 | Chr1 | 35054737 | |
Translocation | Chr2 | 31850100 | Chr1 | 35054738 |