Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27385679	A-G	HET
SBS	Chr1	32821732	C-T	HET
SBS	Chr1	36496707	C-T	Homo
SBS	Chr10	5139352	C-A	HET
SBS	Chr11	10190420	C-T	Homo
SBS	Chr11	26629231	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g44060
SBS	Chr12	1001133	G-T	HET
SBS	Chr12	10465801	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g18140
SBS	Chr12	10465802	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g18140
SBS	Chr12	10945771	G-A	HET
SBS	Chr12	11713808	G-A	HET
SBS	Chr12	11714196	T-A	HET
SBS	Chr12	15074786	T-A	HET
SBS	Chr12	16713361	C-A	HET
SBS	Chr12	17549883	T-A	HET
SBS	Chr2	12534494	G-A	HET
SBS	Chr2	25554262	G-A	Homo
SBS	Chr2	25554264	C-A	Homo
SBS	Chr2	25676480	G-A	Homo
SBS	Chr2	29411430	T-A	HET
SBS	Chr2	7717771	C-T	HET
SBS	Chr2	7717773	G-A	HET
SBS	Chr3	1257839	G-A	Homo
SBS	Chr3	1951123	C-T	Homo
SBS	Chr4	25975979	C-T	Homo
SBS	Chr4	2684786	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g05370
SBS	Chr4	27951511	T-C	Homo
SBS	Chr4	34942412	T-C	Homo
SBS	Chr4	6442976	C-T	HET
SBS	Chr4	7769152	T-C	HET
SBS	Chr5	27037928	T-C	HET
SBS	Chr5	7015418	T-A	HET
SBS	Chr6	11392980	C-A	HET
SBS	Chr6	14246427	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g24350
SBS	Chr6	1854647	A-G	HET
SBS	Chr6	20125094	A-G	HET
SBS	Chr7	16536956	A-T	Homo
SBS	Chr8	11696584	A-G	HET
SBS	Chr8	9613691	G-A	Homo

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	768418	768428	10
Deletion	Chr1	1911757	1911778	21
Deletion	Chr3	4230782	4230792	10
Deletion	Chr2	4736222	4736227	5
Deletion	Chr9	5224157	5224158	1	LOC_Os09g09680
Deletion	Chr5	5531884	5531887	3
Deletion	Chr3	5681286	5681294	8
Deletion	Chr9	5924001	6013000	88999	10
Deletion	Chr10	7209709	7209769	60	LOC_Os10g13350
Deletion	Chr2	7267714	7267718	4
Deletion	Chr8	8433929	8433945	16
Deletion	Chr5	9550001	9661000	110999	14
Deletion	Chr5	9679001	10002000	322999	46
Deletion	Chr5	10029001	10174000	144999	18
Deletion	Chr5	10202001	10266000	63999	10
Deletion	Chr5	10269001	10578000	308999	49
Deletion	Chr8	15254966	15254974	8
Deletion	Chr10	16337401	16337406	5
Deletion	Chr9	19064435	19064437	2
Deletion	Chr9	21263545	21263546	1
Deletion	Chr8	25114226	25114235	9	LOC_Os08g39670

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	1278443	1278444	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	25498416	25660510	2
Inversion	Chr2	25498426	25660524	2
Inversion	Chr2	28025026	28123761	2
Inversion	Chr1	32036428	32361686
Inversion	Chr1	32036442	32361694

Translocations: 13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	2562289	Chr2	31841841	2
Translocation	Chr5	2562694	Chr2	31841850
Translocation	Chr5	2562865	Chr2	8020068
Translocation	Chr5	2563322	Chr2	8020063
Translocation	Chr9	7193889	Chr2	23459207	2
Translocation	Chr9	7194503	Chr2	23459756	2
Translocation	Chr10	11986904	Chr6	21455592
Translocation	Chr11	14148597	Chr1	2542711	2
Translocation	Chr10	18188701	Chr9	1563938	2
Translocation	Chr11	18662924	Chr3	34370626	LOC_Os11g31800
Translocation	Chr11	18662925	Chr3	34368155	LOC_Os11g31800
Translocation	Chr8	20646116	Chr7	1745293	2
Translocation	Chr6	26582182	Chr2	28123768	2

Main menu