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| Mutant Information |
|---|
| Mutant Name | FN3374-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3374-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 23872998 | G-A | HET | ||
| SBS | Chr1 | 27492872 | T-A | HET | ||
| SBS | Chr1 | 930058 | G-A | HET | ||
| SBS | Chr10 | 15824395 | T-A | Homo | ||
| SBS | Chr10 | 1942782 | A-C | HET | ||
| SBS | Chr10 | 8720006 | G-A | HET | ||
| SBS | Chr11 | 197038 | G-C | HET | ||
| SBS | Chr11 | 21839667 | A-T | HET | ||
| SBS | Chr2 | 22663690 | G-A | Homo | ||
| SBS | Chr2 | 26290666 | G-T | HET | ||
| SBS | Chr2 | 26290669 | A-G | HET | ||
| SBS | Chr3 | 30175355 | A-G | HET | ||
| SBS | Chr4 | 11564256 | C-T | HET | ||
| SBS | Chr4 | 17676636 | G-A | Homo | ||
| SBS | Chr4 | 33301708 | T-C | Homo | ||
| SBS | Chr4 | 5372430 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g09980 |
| SBS | Chr5 | 15370221 | C-T | HET | ||
| SBS | Chr5 | 8414287 | C-T | Homo | ||
| SBS | Chr6 | 1057674 | G-A | HET | SPLICE_SITE_DONOR | LOC_Os06g02880 |
| SBS | Chr7 | 10089016 | C-T | HET | ||
| SBS | Chr9 | 20563809 | C-T | Homo |
Deletions: 23
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 2597909 | 2597910 | 1 | |
| Deletion | Chr3 | 3993729 | 3993740 | 11 | |
| Deletion | Chr8 | 11305962 | 11305973 | 11 | |
| Deletion | Chr7 | 11731358 | 11731363 | 5 | LOC_Os07g20330 |
| Deletion | Chr5 | 13566122 | 13566131 | 9 | |
| Deletion | Chr11 | 13680161 | 13680162 | 1 | |
| Deletion | Chr5 | 13831560 | 13831561 | 1 | |
| Deletion | Chr5 | 13912847 | 13912848 | 1 | LOC_Os05g24120 |
| Deletion | Chr1 | 14551853 | 14551855 | 2 | |
| Deletion | Chr9 | 16957923 | 16957927 | 4 | |
| Deletion | Chr5 | 18301619 | 18301628 | 9 | |
| Deletion | Chr3 | 20503045 | 20503047 | 2 | |
| Deletion | Chr3 | 20763907 | 20763909 | 2 | |
| Deletion | Chr5 | 24112379 | 24112406 | 27 | |
| Deletion | Chr3 | 24514753 | 24514759 | 6 | LOC_Os03g43790 |
| Deletion | Chr2 | 26011675 | 26011691 | 16 | |
| Deletion | Chr3 | 26217452 | 26217455 | 3 | LOC_Os03g46350 |
| Deletion | Chr5 | 26676993 | 26676996 | 3 | |
| Deletion | Chr12 | 27067001 | 27122000 | 54999 | 4 |
| Deletion | Chr5 | 27732917 | 27732930 | 13 | |
| Deletion | Chr3 | 29061571 | 29061575 | 4 | |
| Deletion | Chr1 | 31200606 | 31200608 | 2 | |
| Deletion | Chr2 | 34383587 | 34383594 | 7 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 17442466 | 17442470 | 5 | |
| Insertion | Chr12 | 15221597 | 15221598 | 2 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 422245 | 501978 | |
| Inversion | Chr7 | 422251 | 501987 | |
| Inversion | Chr6 | 25452375 | 26296879 | 2 |
| Inversion | Chr6 | 26286801 | 26296881 | 2 |
No Translocation