Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3381-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3381-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 19731788 | A-G | HET | ||
| SBS | Chr1 | 6106686 | A-G | HET | ||
| SBS | Chr10 | 1036736 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g02650 |
| SBS | Chr10 | 13262247 | G-A | HET | ||
| SBS | Chr10 | 18466275 | C-T | HET | ||
| SBS | Chr11 | 10100357 | T-A | HET | ||
| SBS | Chr11 | 3969333 | G-A | HET | ||
| SBS | Chr11 | 9349466 | C-T | HET | ||
| SBS | Chr12 | 10826593 | C-T | Homo | ||
| SBS | Chr12 | 12682755 | A-C | HET | ||
| SBS | Chr12 | 2295873 | C-T | HET | ||
| SBS | Chr12 | 24535555 | G-A | HET | ||
| SBS | Chr2 | 15774852 | A-G | Homo | ||
| SBS | Chr2 | 9770736 | G-A | HET | ||
| SBS | Chr3 | 13199556 | C-T | HET | ||
| SBS | Chr3 | 24092739 | A-G | HET | ||
| SBS | Chr3 | 2626447 | T-C | HET | ||
| SBS | Chr4 | 14095877 | T-C | HET | ||
| SBS | Chr4 | 20052880 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g33120 |
| SBS | Chr4 | 20052881 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g33120 |
| SBS | Chr4 | 2602025 | T-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g05210 |
| SBS | Chr5 | 1080465 | G-C | HET | ||
| SBS | Chr5 | 20944024 | C-T | Homo | ||
| SBS | Chr5 | 7521406 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os05g13560 |
| SBS | Chr6 | 21633729 | G-A | HET | ||
| SBS | Chr7 | 17216527 | C-G | HET | ||
| SBS | Chr7 | 5757402 | A-T | HET | ||
| SBS | Chr7 | 9799198 | C-T | Homo | ||
| SBS | Chr8 | 14048393 | G-C | HET | ||
| SBS | Chr8 | 4061223 | G-A | HET | ||
| SBS | Chr8 | 6549208 | T-A | HET | ||
| SBS | Chr8 | 6549209 | C-A | HET | ||
| SBS | Chr9 | 14181720 | G-A | HET | ||
| SBS | Chr9 | 5790894 | C-T | HET | ||
| SBS | Chr9 | 6216835 | A-T | HET |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 793924 | 793929 | 5 | |
| Deletion | Chr4 | 1541118 | 1541132 | 14 | |
| Deletion | Chr6 | 3237690 | 3237691 | 1 | |
| Deletion | Chr2 | 4002619 | 4002629 | 10 | |
| Deletion | Chr3 | 8416819 | 8416820 | 1 | |
| Deletion | Chr8 | 8808001 | 8844000 | 35999 | 6 |
| Deletion | Chr12 | 10515295 | 10515310 | 15 | |
| Deletion | Chr6 | 10645279 | 10645293 | 14 | |
| Deletion | Chr12 | 11007901 | 11007903 | 2 | |
| Deletion | Chr6 | 11856001 | 11951000 | 94999 | 15 |
| Deletion | Chr7 | 15496135 | 15496140 | 5 | |
| Deletion | Chr4 | 16344560 | 16344593 | 33 | |
| Deletion | Chr3 | 19526433 | 19526439 | 6 | |
| Deletion | Chr2 | 22213001 | 22213005 | 4 | |
| Deletion | Chr6 | 22489249 | 22489250 | 1 | LOC_Os06g38040 |
| Deletion | Chr1 | 22657175 | 22657181 | 6 | LOC_Os01g40170 |
| Deletion | Chr10 | 22746651 | 22746668 | 17 | |
| Deletion | Chr11 | 25417776 | 25417777 | 1 | |
| Deletion | Chr2 | 35113824 | 35113825 | 1 | |
| Deletion | Chr1 | 40060525 | 40060534 | 9 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr6 | 29472635 | 29472636 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 17598576 | 18095213 | 2 |
| Inversion | Chr11 | 17598580 | 18096648 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 6999124 | Chr1 | 11768943 | |
| Translocation | Chr8 | 16604028 | Chr3 | 1046559 | LOC_Os08g27180 |