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Mutant Information

Variant Information

Single base substitutions: 45

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26091005	G-C	Homo
SBS	Chr1	34055245	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g58920
SBS	Chr1	34055246	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g58920
SBS	Chr1	40836174	G-T	HET
SBS	Chr1	40836208	C-A	HET
SBS	Chr1	41294923	C-T	HET
SBS	Chr1	41294924	A-T	HET
SBS	Chr10	16193897	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g31020
SBS	Chr10	16628651	T-C	HET
SBS	Chr10	22897986	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g42470
SBS	Chr11	13735122	C-T	HET
SBS	Chr11	1480409	G-T	Homo
SBS	Chr11	1829634	G-A	HET
SBS	Chr11	28843211	G-T	Homo
SBS	Chr11	6113157	G-A	Homo
SBS	Chr11	8032481	G-A	HET
SBS	Chr12	11157391	C-T	Homo
SBS	Chr12	14863837	G-T	Homo
SBS	Chr12	15983673	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g27240
SBS	Chr12	1742213	C-T	HET
SBS	Chr12	18361374	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g30570
SBS	Chr12	23252414	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g37840
SBS	Chr12	26336025	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g42370
SBS	Chr12	7455894	G-A	HET
SBS	Chr2	24640684	A-T	HET
SBS	Chr2	4402124	C-T	Homo
SBS	Chr3	14936644	T-A	Homo
SBS	Chr3	22559214	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g40560
SBS	Chr3	31798072	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g55860
SBS	Chr3	32761603	G-A	HET
SBS	Chr3	5065657	G-C	HET
SBS	Chr4	8908813	G-C	Homo
SBS	Chr5	8861802	G-T	HET
SBS	Chr5	9805000	A-T	Homo
SBS	Chr6	13855008	C-T	HET
SBS	Chr6	22940258	C-T	HET
SBS	Chr7	3488335	C-A	Homo
SBS	Chr8	17152879	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g28110
SBS	Chr8	22667869	A-T	HET
SBS	Chr8	22667871	C-T	HET
SBS	Chr8	22721688	G-C	HET
SBS	Chr8	25808646	C-T	HET
SBS	Chr9	11955794	C-T	HET
SBS	Chr9	16033820	T-A	HET
SBS	Chr9	9505429	T-A	Homo

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1428745	1428754	9
Deletion	Chr3	1532511	1532513	2
Deletion	Chr2	2752677	2752704	27
Deletion	Chr7	2805232	2805240	8
Deletion	Chr8	3599474	3599480	6
Deletion	Chr7	6389816	6389817	1
Deletion	Chr10	10522740	10522753	13
Deletion	Chr9	13563401	13563405	4
Deletion	Chr11	14605501	14605503	2
Deletion	Chr5	17119237	17119239	2	LOC_Os05g29130
Deletion	Chr3	28010598	28010604	6	LOC_Os03g49170
Deletion	Chr1	28356964	28356965	1
Deletion	Chr3	31323048	31323068	20
Deletion	Chr1	40860186	40860187	1	LOC_Os01g70550
Deletion	Chr1	42879661	42879662	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	3592869	3592872	4
Insertion	Chr3	20637990	20637990	1
Insertion	Chr6	30986062	30986063	2
Insertion	Chr8	8017311	8017312	2

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	11858660	12294952	2
Inversion	Chr3	11858672	12295124	2
Inversion	Chr11	18567477	18647021	2
Inversion	Chr11	18567484	18647023	2
Inversion	Chr1	26088452	26348008
Inversion	Chr1	26088829	26353275
Inversion	Chr7	28017528	28384102	2
Inversion	Chr7	28017534	28384116	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr4	14105865	Chr3	34148285
Translocation	Chr5	16250657	Chr1	26088468
Translocation	Chr5	16250663	Chr1	26088829
Translocation	Chr8	27043503	Chr7	18570586

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