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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	36547538	C-T	HET
SBS	Chr10	5422742	T-C	HET
SBS	Chr11	11145900	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g19370
SBS	Chr11	14882759	C-T	HET
SBS	Chr11	21925533	A-G	Homo
SBS	Chr11	23719192	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g39790
SBS	Chr11	24977005	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g41620
SBS	Chr11	3905498	A-C	HET
SBS	Chr11	8777214	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g15490
SBS	Chr11	8777215	C-A	HET	STOP_GAINED	LOC_Os11g15490
SBS	Chr2	13703446	C-G	HET
SBS	Chr2	1756838	T-G	Homo
SBS	Chr2	28600920	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g46880
SBS	Chr2	32334099	C-G	HET
SBS	Chr2	32334105	G-T	HET
SBS	Chr3	18856173	T-A	HET
SBS	Chr3	19445029	G-T	Homo
SBS	Chr4	8380388	C-T	HET
SBS	Chr5	17785428	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g30710
SBS	Chr6	11525042	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g20090
SBS	Chr6	20248567	G-A	HET
SBS	Chr7	28706966	T-A	Homo
SBS	Chr7	6631643	G-A	HET
SBS	Chr7	6631652	G-A	HET
SBS	Chr7	8716231	A-G	HET
SBS	Chr8	15147450	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g24980
SBS	Chr8	25018751	T-A	Homo
SBS	Chr9	8330241	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g14070

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	268189	268191	2
Deletion	Chr11	2550001	2618000	67999	8
Deletion	Chr11	2673087	2673089	2
Deletion	Chr9	2820208	2820209	1
Deletion	Chr6	5610574	5610575	1	LOC_Os06g10740
Deletion	Chr3	5916001	5936000	19999	2
Deletion	Chr1	6404089	6404091	2
Deletion	Chr3	7553402	7553404	2	LOC_Os03g13920
Deletion	Chr9	7997276	7997278	2
Deletion	Chr2	8615095	8615097	2
Deletion	Chr6	8788171	8788177	6
Deletion	Chr1	9355014	9355016	2
Deletion	Chr4	12909940	12910460	520
Deletion	Chr1	14415001	14433000	17999	LOC_Os01g25450
Deletion	Chr7	15588431	15588432	1
Deletion	Chr4	19695001	19705000	9999	LOC_Os04g32690
Deletion	Chr12	21015428	21015429	1
Deletion	Chr7	21206207	21206209	2
Deletion	Chr1	21829343	21829355	12
Deletion	Chr3	22133211	22133219	8	LOC_Os03g39780
Deletion	Chr10	22340001	22367000	26999
Deletion	Chr1	23823419	23823420	1
Deletion	Chr4	26413261	26413262	1
Deletion	Chr5	26694001	26704000	9999	LOC_Os05g46030
Deletion	Chr3	26905001	26921000	15999	LOC_Os03g47580
Deletion	Chr3	27535001	27592000	56999	9
Deletion	Chr3	27618001	27793000	174999	24
Deletion	Chr6	28207001	28225000	17999	LOC_Os06g46475
Deletion	Chr5	28845135	28845137	2
Deletion	Chr4	30093241	30093244	3

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	21094429	21094434	6
Insertion	Chr12	26329162	26329162	1
Insertion	Chr4	7546470	7546470	1	LOC_Os04g13530
Insertion	Chr5	18371431	18371432	2
Insertion	Chr5	969563	969564	2
Insertion	Chr6	16046926	16046935	10

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	4923227	5793220
Inversion	Chr7	4923241	5793241

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	126508	Chr7	14047221
Translocation	Chr11	6190465	Chr9	1170742	LOC_Os11g11180
Translocation	Chr8	9835308	Chr7	4797623
Translocation	Chr6	10379502	Chr1	2481712	LOC_Os06g17880
Translocation	Chr5	18263264	Chr2	7695858	2
Translocation	Chr5	20414749	Chr1	43066778	2
Translocation	Chr11	24450305	Chr3	28273912	2
Translocation	Chr11	28034778	Chr10	1923799	2

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