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| Mutant Information |
|---|
| Mutant Name | FN3390-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3390-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 37737977 | G-A | HET | ||
| SBS | Chr1 | 6113702 | C-A | Homo | ||
| SBS | Chr10 | 19717703 | G-A | HET | ||
| SBS | Chr10 | 19717705 | G-A | HET | ||
| SBS | Chr11 | 18594117 | A-G | HET | ||
| SBS | Chr11 | 20783228 | T-A | Homo | ||
| SBS | Chr11 | 5283597 | C-T | Homo | ||
| SBS | Chr11 | 6185853 | C-T | HET | ||
| SBS | Chr11 | 6257434 | G-A | HET | ||
| SBS | Chr2 | 21790598 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os02g36150 |
| SBS | Chr2 | 27517627 | G-C | Homo | ||
| SBS | Chr2 | 34600665 | G-A | HET | ||
| SBS | Chr3 | 14005514 | T-C | HET | ||
| SBS | Chr3 | 25004460 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g44440 |
| SBS | Chr3 | 5152607 | C-A | HET | ||
| SBS | Chr4 | 10198185 | G-A | HET | ||
| SBS | Chr4 | 20705393 | T-C | HET | ||
| SBS | Chr5 | 14310790 | C-T | HET | ||
| SBS | Chr5 | 18700228 | C-A | HET | STOP_GAINED | LOC_Os05g32080 |
| SBS | Chr5 | 26270538 | C-T | HET | ||
| SBS | Chr6 | 10942126 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g19230 |
| SBS | Chr6 | 1678466 | G-A | HET | ||
| SBS | Chr6 | 4776287 | A-G | HET | ||
| SBS | Chr6 | 8086312 | G-A | HET | ||
| SBS | Chr6 | 8427591 | G-A | HET | ||
| SBS | Chr8 | 16825359 | A-T | HET | ||
| SBS | Chr8 | 18450654 | C-A | HET | ||
| SBS | Chr8 | 8359394 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g13950 |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 4668863 | 4668870 | 7 | |
| Deletion | Chr8 | 5759311 | 5759312 | 1 | |
| Deletion | Chr8 | 6566571 | 6566576 | 5 | |
| Deletion | Chr8 | 7683212 | 7683213 | 1 | LOC_Os08g12920 |
| Deletion | Chr10 | 10013910 | 10013912 | 2 | LOC_Os10g19960 |
| Deletion | Chr7 | 11399654 | 11399830 | 176 | LOC_Os07g19250 |
| Deletion | Chr11 | 12998861 | 12998862 | 1 | LOC_Os11g22600 |
| Deletion | Chr4 | 13621403 | 13621404 | 1 | |
| Deletion | Chr4 | 15212088 | 15212093 | 5 | |
| Deletion | Chr9 | 15292001 | 15333000 | 40999 | 7 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 825955 | 825956 | 2 | |
| Insertion | Chr5 | 25602269 | 25602269 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 1194182 | 1196637 | 2 |
| Inversion | Chr11 | 1194375 | 1196645 | 2 |
| Inversion | Chr1 | 6201255 | 6880874 | 2 |
| Inversion | Chr1 | 6201258 | 6880881 | 2 |
Translocations: 11
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 1194189 | Chr9 | 14453556 | 2 |
| Translocation | Chr10 | 7621371 | Chr5 | 17252613 | |
| Translocation | Chr12 | 15876581 | Chr2 | 16818007 | |
| Translocation | Chr11 | 18336058 | Chr1 | 9105218 | |
| Translocation | Chr12 | 19249526 | Chr10 | 10539334 | |
| Translocation | Chr8 | 21187415 | Chr7 | 15841625 | 2 |
| Translocation | Chr11 | 22703753 | Chr7 | 7616450 | LOC_Os11g38330 |
| Translocation | Chr12 | 22721789 | Chr10 | 6570962 | |
| Translocation | Chr3 | 25888705 | Chr1 | 13711216 | |
| Translocation | Chr12 | 27006075 | Chr2 | 10461206 | |
| Translocation | Chr11 | 28092414 | Chr7 | 21747242 |