Search Results
| Mutant Information |
|---|
| Mutant Name | FN3391-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3391-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 31
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 8202370 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g14660 |
| SBS | Chr1 | 14954797 | G-A | Homo | ||
| SBS | Chr1 | 25387731 | G-A | HET | ||
| SBS | Chr1 | 35084690 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g60670 |
| SBS | Chr2 | 15543275 | T-G | HET | ||
| SBS | Chr3 | 5024961 | G-A | HET | ||
| SBS | Chr3 | 12721398 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g22190 |
| SBS | Chr3 | 30912085 | C-T | Homo | ||
| SBS | Chr3 | 35731709 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g63240 |
| SBS | Chr4 | 8167402 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g14570 |
| SBS | Chr4 | 25038766 | A-G | HET | ||
| SBS | Chr4 | 33370660 | C-T | HET | ||
| SBS | Chr5 | 4735696 | G-A | HET | ||
| SBS | Chr6 | 1665832 | C-G | HET | ||
| SBS | Chr6 | 7659578 | C-T | HET | ||
| SBS | Chr6 | 27446821 | G-A | HET | ||
| SBS | Chr7 | 286695 | T-A | Homo | ||
| SBS | Chr7 | 13486126 | A-G | HET | ||
| SBS | Chr7 | 16564266 | G-A | HET | ||
| SBS | Chr8 | 11344679 | A-G | HET | ||
| SBS | Chr8 | 16367067 | T-A | HET | ||
| SBS | Chr8 | 18249104 | C-T | HET | ||
| SBS | Chr8 | 23140566 | A-T | HET | ||
| SBS | Chr10 | 17150265 | G-A | HET | ||
| SBS | Chr11 | 9674140 | G-A | HET | ||
| SBS | Chr11 | 11168961 | G-T | HET | ||
| SBS | Chr12 | 618709 | G-T | Homo | ||
| SBS | Chr12 | 650148 | G-A | HET | ||
| SBS | Chr12 | 1485303 | A-G | Homo | ||
| SBS | Chr12 | 11671600 | A-G | HET | ||
| SBS | Chr12 | 13588653 | C-A | HET |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 1819920 | 1819922 | 2 | |
| Deletion | Chr9 | 1977223 | 1977226 | 3 | |
| Deletion | Chr12 | 3315586 | 3315595 | 9 | LOC_Os12g06810 |
| Deletion | Chr12 | 3381555 | 3381583 | 28 | |
| Deletion | Chr10 | 7640987 | 7640989 | 2 | |
| Deletion | Chr3 | 12767545 | 12767549 | 4 | |
| Deletion | Chr1 | 13392816 | 13392821 | 5 | |
| Deletion | Chr8 | 17318001 | 17479000 | 160999 | 20 |
| Deletion | Chr8 | 17480001 | 17671000 | 190999 | 28 |
| Deletion | Chr4 | 19337294 | 19337298 | 4 | |
| Deletion | Chr12 | 20917882 | 20917888 | 6 | |
| Deletion | Chr1 | 28376728 | 28376729 | 1 | LOC_Os01g49360 |
| Deletion | Chr2 | 33640654 | 33640655 | 1 | |
| Deletion | Chr3 | 35466906 | 35466914 | 8 | |
| Deletion | Chr3 | 35701984 | 35701994 | 10 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 33502228 | 33502230 | 3 | |
| Insertion | Chr12 | 24110535 | 24110536 | 2 | |
| Insertion | Chr5 | 26267735 | 26267735 | 1 | LOC_Os05g45250 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 16367746 | 16477359 | 2 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 2058172 | Chr1 | 34073756 | |
| Translocation | Chr10 | 2058174 | Chr1 | 34072669 | |
| Translocation | Chr10 | 4012170 | Chr1 | 5474318 | |
| Translocation | Chr7 | 13236653 | Chr5 | 9247535 | LOC_Os07g23440 |
| Translocation | Chr8 | 26906514 | Chr7 | 9458350 | LOC_Os08g42570 |