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| Mutant Information |
|---|
| Mutant Name | FN3393-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3393-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 39
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17248203 | G-A | Homo | ||
| SBS | Chr1 | 17408875 | C-T | HET | ||
| SBS | Chr1 | 41943607 | G-A | HET | ||
| SBS | Chr1 | 4825890 | G-T | HET | ||
| SBS | Chr1 | 8857971 | C-T | HET | ||
| SBS | Chr10 | 18397353 | G-A | HET | ||
| SBS | Chr10 | 4784964 | A-G | Homo | ||
| SBS | Chr11 | 14467164 | C-T | HET | ||
| SBS | Chr11 | 18865578 | G-A | Homo | ||
| SBS | Chr11 | 18865579 | T-G | Homo | ||
| SBS | Chr12 | 13058545 | C-T | HET | ||
| SBS | Chr12 | 14603093 | G-A | HET | ||
| SBS | Chr12 | 17341258 | C-T | HET | ||
| SBS | Chr12 | 25428226 | C-T | HET | ||
| SBS | Chr12 | 9001622 | G-A | HET | ||
| SBS | Chr2 | 14068682 | G-A | HET | ||
| SBS | Chr2 | 22942300 | C-T | HET | ||
| SBS | Chr2 | 8976785 | T-C | HET | ||
| SBS | Chr3 | 12095836 | A-C | HET | ||
| SBS | Chr3 | 14119866 | T-C | HET | ||
| SBS | Chr3 | 19696004 | C-T | Homo | ||
| SBS | Chr3 | 27074870 | T-G | HET | ||
| SBS | Chr4 | 13893386 | G-A | HET | ||
| SBS | Chr4 | 1851742 | A-T | HET | ||
| SBS | Chr5 | 24593701 | A-C | HET | ||
| SBS | Chr5 | 5513531 | C-T | HET | ||
| SBS | Chr5 | 9888852 | C-T | HET | ||
| SBS | Chr6 | 17441917 | C-A | HET | ||
| SBS | Chr6 | 22282467 | C-T | HET | ||
| SBS | Chr6 | 3412590 | G-A | HET | ||
| SBS | Chr7 | 1002625 | C-A | HET | ||
| SBS | Chr7 | 2549453 | G-A | HET | ||
| SBS | Chr8 | 16944443 | C-T | Homo | ||
| SBS | Chr8 | 19155898 | A-G | HET | ||
| SBS | Chr8 | 7003034 | A-C | HET | ||
| SBS | Chr9 | 1671436 | G-A | Homo | ||
| SBS | Chr9 | 2137778 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g04120 |
| SBS | Chr9 | 6892745 | C-T | HET | ||
| SBS | Chr9 | 9236679 | G-C | Homo |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 240268 | 240283 | 15 | |
| Deletion | Chr3 | 693917 | 693918 | 1 | LOC_Os03g02140 |
| Deletion | Chr12 | 2691408 | 2691410 | 2 | |
| Deletion | Chr9 | 2737049 | 2737050 | 1 | LOC_Os09g05080 |
| Deletion | Chr2 | 6712641 | 6712642 | 1 | |
| Deletion | Chr4 | 8839027 | 8839030 | 3 | |
| Deletion | Chr11 | 11626285 | 11626295 | 10 | |
| Deletion | Chr10 | 11799953 | 11799975 | 22 | |
| Deletion | Chr10 | 16280001 | 16392000 | 111999 | 10 |
| Deletion | Chr2 | 17433040 | 17433044 | 4 | |
| Deletion | Chr9 | 19314001 | 19454000 | 139999 | 25 |
| Deletion | Chr4 | 20363028 | 20363029 | 1 | |
| Deletion | Chr6 | 22216883 | 22216888 | 5 | |
| Deletion | Chr3 | 26061955 | 26061956 | 1 | LOC_Os03g46080 |
| Deletion | Chr1 | 26139001 | 26208000 | 68999 | 11 |
| Deletion | Chr1 | 26352001 | 26393000 | 40999 | 6 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 17189074 | 17189074 | 1 | |
| Insertion | Chr2 | 16594619 | 16594621 | 3 | LOC_Os02g28020 |
| Insertion | Chr6 | 4802 | 4802 | 1 | |
| Insertion | Chr7 | 4335170 | 4335171 | 2 |
No Inversion
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 8196297 | Chr4 | 13912048 | |
| Translocation | Chr12 | 9228988 | Chr4 | 7080256 |