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| Mutant Information |
|---|
| Mutant Name | FN3400-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3400-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21031541 | T-C | HET | ||
| SBS | Chr1 | 28575831 | T-C | HET | ||
| SBS | Chr1 | 29824040 | G-A | HET | ||
| SBS | Chr1 | 4798484 | C-T | HET | ||
| SBS | Chr10 | 7798306 | C-A | HET | ||
| SBS | Chr12 | 12614284 | C-T | HET | ||
| SBS | Chr12 | 13662170 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g24040 |
| SBS | Chr12 | 17221000 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os12g29070 |
| SBS | Chr12 | 26043800 | C-A | HET | ||
| SBS | Chr2 | 24919794 | A-T | Homo | ||
| SBS | Chr2 | 32937903 | C-G | Homo | ||
| SBS | Chr3 | 2893819 | G-A | HET | ||
| SBS | Chr3 | 30010902 | C-A | HET | ||
| SBS | Chr3 | 485479 | C-T | Homo | ||
| SBS | Chr3 | 7491605 | C-T | Homo | ||
| SBS | Chr4 | 10722289 | T-C | HET | ||
| SBS | Chr4 | 11113325 | A-T | HET | ||
| SBS | Chr4 | 11919255 | A-G | HET | ||
| SBS | Chr4 | 13039051 | T-G | HET | ||
| SBS | Chr4 | 7209572 | T-G | HET | ||
| SBS | Chr5 | 14133500 | C-A | Homo | ||
| SBS | Chr5 | 18204802 | T-A | HET | ||
| SBS | Chr5 | 28895240 | G-T | HET | ||
| SBS | Chr5 | 28895241 | G-T | HET | ||
| SBS | Chr5 | 3749891 | C-T | HET | ||
| SBS | Chr7 | 10740621 | T-A | HET | ||
| SBS | Chr7 | 19219972 | T-G | HET | ||
| SBS | Chr7 | 4659 | G-T | HET | ||
| SBS | Chr8 | 12688921 | T-A | Homo | ||
| SBS | Chr9 | 12319043 | C-T | HET | ||
| SBS | Chr9 | 5885753 | C-T | HET | ||
| SBS | Chr9 | 8066354 | C-T | Homo |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 116261 | 116264 | 3 | |
| Deletion | Chr5 | 5134396 | 5134486 | 90 | |
| Deletion | Chr7 | 6389816 | 6389817 | 1 | |
| Deletion | Chr4 | 7294736 | 7294738 | 2 | |
| Deletion | Chr3 | 9215202 | 9215204 | 2 | |
| Deletion | Chr11 | 9907073 | 9907091 | 18 | |
| Deletion | Chr7 | 12205475 | 12205476 | 1 | |
| Deletion | Chr8 | 12675105 | 12675110 | 5 | LOC_Os08g21230 |
| Deletion | Chr1 | 14370601 | 14370604 | 3 | |
| Deletion | Chr2 | 14603549 | 14603552 | 3 | |
| Deletion | Chr5 | 14960009 | 14960011 | 2 | |
| Deletion | Chr2 | 30706712 | 30706713 | 1 | |
| Deletion | Chr1 | 39205874 | 39205880 | 6 |
Insertions: 8
No Inversion
Translocations: 10
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 265187 | Chr10 | 10709078 | |
| Translocation | Chr12 | 3902631 | Chr7 | 2280346 | |
| Translocation | Chr10 | 18585791 | Chr1 | 11667929 | |
| Translocation | Chr12 | 18622805 | Chr4 | 505947 | 2 |
| Translocation | Chr6 | 21595078 | Chr3 | 25930994 | |
| Translocation | Chr11 | 22169139 | Chr4 | 27101032 | LOC_Os11g37540 |
| Translocation | Chr6 | 23398482 | Chr3 | 22535157 | |
| Translocation | Chr8 | 23737584 | Chr7 | 23854829 | |
| Translocation | Chr12 | 24575394 | Chr8 | 16303058 | |
| Translocation | Chr8 | 28053077 | Chr6 | 24355944 |