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| Mutant Information |
|---|
| Mutant Name | FN3407-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3407-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr10 | 22332486 | G-A | HET | ||
| SBS | Chr10 | 9565118 | C-G | HET | ||
| SBS | Chr11 | 11253574 | C-T | HET | ||
| SBS | Chr11 | 11974037 | C-T | HET | ||
| SBS | Chr11 | 18895139 | C-T | Homo | ||
| SBS | Chr11 | 19875442 | G-A | Homo | ||
| SBS | Chr11 | 28644587 | C-T | Homo | ||
| SBS | Chr11 | 6162937 | A-T | HET | ||
| SBS | Chr12 | 17341277 | C-T | HET | ||
| SBS | Chr12 | 18820538 | T-A | HET | ||
| SBS | Chr12 | 21452507 | C-A | HET | ||
| SBS | Chr12 | 21452508 | C-T | HET | ||
| SBS | Chr12 | 2786514 | T-A | HET | ||
| SBS | Chr12 | 889715 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g02570 |
| SBS | Chr2 | 11535329 | T-A | Homo | ||
| SBS | Chr2 | 21085311 | A-G | Homo | ||
| SBS | Chr2 | 2458461 | G-A | Homo | ||
| SBS | Chr2 | 4365474 | G-A | HET | ||
| SBS | Chr2 | 8321056 | C-A | Homo | ||
| SBS | Chr3 | 13388848 | G-A | HET | ||
| SBS | Chr3 | 3898669 | C-T | HET | ||
| SBS | Chr4 | 2375874 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g04930 |
| SBS | Chr4 | 9638578 | G-A | HET | ||
| SBS | Chr5 | 7596864 | T-G | Homo | ||
| SBS | Chr6 | 26961272 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g44670 |
| SBS | Chr8 | 11482053 | A-G | HET | ||
| SBS | Chr8 | 13698319 | T-G | HET | ||
| SBS | Chr8 | 14399601 | T-A | HET | ||
| SBS | Chr8 | 19895922 | C-A | Homo | ||
| SBS | Chr8 | 19895927 | G-A | Homo | ||
| SBS | Chr8 | 20894272 | G-A | HET | ||
| SBS | Chr8 | 26235522 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g41530 |
| SBS | Chr8 | 26475343 | C-A | HET | ||
| SBS | Chr8 | 969161 | G-A | HET | ||
| SBS | Chr9 | 605984 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g01900 |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 2902130 | 2902135 | 5 | |
| Deletion | Chr2 | 7962713 | 7962714 | 1 | |
| Deletion | Chr12 | 9106956 | 9106958 | 2 | |
| Deletion | Chr1 | 9488001 | 9510000 | 21999 | 3 |
| Deletion | Chr4 | 15174573 | 15174574 | 1 | |
| Deletion | Chr5 | 20842652 | 20842654 | 2 | LOC_Os05g35100 |
| Deletion | Chr12 | 24016480 | 24016482 | 2 | |
| Deletion | Chr4 | 28509996 | 28510003 | 7 | |
| Deletion | Chr1 | 34930694 | 34930695 | 1 |
Insertions: 5
No Inversion
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 141711 | Chr4 | 3231255 | |
| Translocation | Chr11 | 7001934 | Chr6 | 1655957 | |
| Translocation | Chr9 | 12688235 | Chr1 | 14628333 | |
| Translocation | Chr4 | 13911798 | Chr1 | 18784309 | |
| Translocation | Chr6 | 16552093 | Chr4 | 2748318 | 2 |
| Translocation | Chr9 | 16923022 | Chr7 | 5329639 | 2 |
| Translocation | Chr11 | 19199011 | Chr8 | 15172260 | LOC_Os11g32530 |
| Translocation | Chr9 | 20408114 | Chr3 | 5233890 |