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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7505780	G-A	Homo
SBS	Chr1	32602701	G-A	HET
SBS	Chr2	1756296	T-C	HET
SBS	Chr2	5290732	T-C	HET
SBS	Chr2	9100208	C-T	HET
SBS	Chr2	10486243	T-C	HET
SBS	Chr2	15343378	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g26110
SBS	Chr2	21789115	C-T	HET
SBS	Chr3	10172788	G-A	HET
SBS	Chr3	28784278	C-T	HET
SBS	Chr4	8353539	A-T	HET
SBS	Chr4	31084792	A-T	HET
SBS	Chr4	32457152	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g54580
SBS	Chr5	5021594	T-A	HET
SBS	Chr5	5983127	G-A	HET
SBS	Chr5	8494095	C-T	HET
SBS	Chr5	8494104	G-T	HET
SBS	Chr5	10184414	A-G	HET
SBS	Chr6	5088558	G-T	Homo
SBS	Chr6	6541902	T-C	Homo
SBS	Chr6	15557253	G-A	HET
SBS	Chr6	26858869	A-G	HET
SBS	Chr6	28436827	A-T	HET
SBS	Chr8	12803920	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g21480
SBS	Chr8	15166179	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g25010
SBS	Chr8	25750023	G-A	HET
SBS	Chr9	11984476	A-T	Homo
SBS	Chr9	11984477	A-T	Homo
SBS	Chr10	3033995	T-C	HET
SBS	Chr11	4213280	C-T	HET
SBS	Chr11	12586703	C-T	HET
SBS	Chr11	13348495	G-T	Homo
SBS	Chr11	16586628	A-C	HET
SBS	Chr12	16249774	G-A	HET

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	948121	948135	14	LOC_Os05g02680
Deletion	Chr5	2274998	2274999	1
Deletion	Chr5	2428001	2446000	17999	3
Deletion	Chr11	6005998	6006003	5
Deletion	Chr5	8832135	8832136	1
Deletion	Chr3	12124420	12124421	1
Deletion	Chr5	12289182	12289184	2
Deletion	Chr5	18477118	18477132	14
Deletion	Chr2	19597001	19607000	9999	LOC_Os02g32980
Deletion	Chr2	19614001	19690000	75999	13
Deletion	Chr2	19693001	19905000	211999	36
Deletion	Chr2	19909001	20159000	249999	31
Deletion	Chr3	21260104	21260110	6
Deletion	Chr6	21365450	21365451	1
Deletion	Chr5	29433136	29433149	13
Deletion	Chr3	33568795	33568806	11
Deletion	Chr3	36068109	36068110	1
Deletion	Chr1	40431009	40431011	2

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	32366711	32366712	2
Insertion	Chr1	19729900	19729900	1
Insertion	Chr2	19774202	19774202	1
Insertion	Chr4	5982180	5982180	1
Insertion	Chr7	6431611	6431616	6	LOC_Os07g11640
Insertion	Chr9	7153260	7153260	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1439727	2092460
Inversion	Chr5	1471694	2092452	LOC_Os05g03480
Inversion	Chr5	1478884	2446500	LOC_Os05g03500

Translocations: 14

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	5560122	Chr1	21416611	2
Translocation	Chr11	7078606	Chr7	17406960	2
Translocation	Chr8	7624308	Chr1	21407876
Translocation	Chr8	9911837	Chr1	19823117
Translocation	Chr9	11307386	Chr6	22141205
Translocation	Chr11	14490034	Chr9	14816204	2
Translocation	Chr11	14490218	Chr9	14812428	2
Translocation	Chr9	14801337	Chr7	29604469	2
Translocation	Chr9	14812414	Chr7	29604466	2
Translocation	Chr10	16098010	Chr7	4798226	LOC_Os10g30870
Translocation	Chr4	16824558	Chr1	11799335
Translocation	Chr12	20641375	Chr9	22733656
Translocation	Chr11	27760873	Chr7	26193282	LOC_Os11g45890
Translocation	Chr4	30101554	Chr3	8452340

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