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Mutant Information |
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Mutant Name | FN3413-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3413-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 31
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 2095734 | G-C | HET | ||
SBS | Chr1 | 9782928 | A-G | HET | ||
SBS | Chr1 | 24577206 | G-A | HET | ||
SBS | Chr1 | 27605111 | G-A | HET | ||
SBS | Chr1 | 30377657 | C-T | Homo | ||
SBS | Chr1 | 35293651 | G-A | Homo | ||
SBS | Chr1 | 37753699 | G-T | Homo | ||
SBS | Chr1 | 40393028 | A-G | HET | ||
SBS | Chr1 | 40446718 | G-T | HET | ||
SBS | Chr2 | 19558608 | G-T | HET | ||
SBS | Chr2 | 34785302 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g56740 |
SBS | Chr3 | 12869018 | G-A | Homo | ||
SBS | Chr3 | 13142825 | C-G | Homo | ||
SBS | Chr3 | 32731391 | G-A | HET | ||
SBS | Chr4 | 15111408 | C-T | Homo | ||
SBS | Chr5 | 14598178 | C-T | HET | ||
SBS | Chr5 | 18178741 | G-A | HET | ||
SBS | Chr5 | 23770733 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g40470 |
SBS | Chr6 | 16800978 | A-T | Homo | ||
SBS | Chr7 | 8319229 | A-G | HET | ||
SBS | Chr7 | 11119572 | C-T | HET | ||
SBS | Chr7 | 23874043 | C-G | HET | ||
SBS | Chr7 | 24101151 | T-G | HET | ||
SBS | Chr8 | 6738620 | C-T | HET | ||
SBS | Chr11 | 7430249 | G-A | Homo | ||
SBS | Chr11 | 11166831 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g19420 |
SBS | Chr11 | 26620581 | C-T | Homo | ||
SBS | Chr12 | 3683515 | G-A | HET | ||
SBS | Chr12 | 8859919 | G-A | HET | ||
SBS | Chr12 | 10578002 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g18320 |
SBS | Chr12 | 21622407 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g35560 |
Deletions: 15
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr6 | 1127932 | 1127939 | 7 | |
Deletion | Chr1 | 2354066 | 2354071 | 5 | |
Deletion | Chr11 | 7428730 | 7428731 | 1 | LOC_Os11g13540 |
Deletion | Chr11 | 10623321 | 10623330 | 9 | |
Deletion | Chr9 | 11149782 | 11149783 | 1 | LOC_Os09g18190 |
Deletion | Chr7 | 13871178 | 13871182 | 4 | |
Deletion | Chr4 | 14633430 | 14633436 | 6 | |
Deletion | Chr6 | 18388060 | 18388061 | 1 | |
Deletion | Chr11 | 18789871 | 18789879 | 8 | |
Deletion | Chr3 | 19435114 | 19435124 | 10 | |
Deletion | Chr8 | 19868411 | 19868412 | 1 | |
Deletion | Chr4 | 20618945 | 20618950 | 5 | |
Deletion | Chr5 | 25540097 | 25540115 | 18 | |
Deletion | Chr6 | 29396167 | 29396169 | 2 | |
Deletion | Chr4 | 33888844 | 33888848 | 4 | LOC_Os04g56850 |
Insertions: 5
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr5 | 10064012 | 10198786 | 2 |
Inversion | Chr12 | 20330330 | 20989144 | 2 |
Inversion | Chr3 | 35332111 | 35332212 | LOC_Os03g62370 |
Translocations: 3
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr10 | 4933654 | Chr7 | 6427414 | 2 |
Translocation | Chr8 | 10668730 | Chr6 | 18881069 | 2 |
Translocation | Chr8 | 11964848 | Chr7 | 18053949 | LOC_Os08g19980 |