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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4077819	T-A	Homo
SBS	Chr1	26386830	G-A	HET
SBS	Chr1	38389760	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g66110
SBS	Chr2	7001518	C-T	HET
SBS	Chr2	7371693	C-T	HET
SBS	Chr2	22592391	C-T	HET
SBS	Chr2	26053567	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g43250
SBS	Chr2	33902535	G-A	HET	STOP_GAINED	LOC_Os02g55350
SBS	Chr3	1286383	T-A	HET
SBS	Chr3	20164664	G-C	Homo
SBS	Chr3	33610787	T-C	Homo
SBS	Chr4	13488003	C-T	HET
SBS	Chr4	18160145	C-A	Homo
SBS	Chr4	20405728	G-T	Homo
SBS	Chr5	10819585	G-A	Homo
SBS	Chr5	23088185	G-A	HET
SBS	Chr5	23382754	C-T	HET
SBS	Chr6	11686874	T-C	Homo
SBS	Chr6	16676872	C-T	Homo
SBS	Chr7	6828173	T-C	HET
SBS	Chr7	10577472	G-A	HET
SBS	Chr7	17954085	C-G	HET
SBS	Chr9	10045165	T-G	Homo
SBS	Chr9	13587096	A-G	HET
SBS	Chr10	7881440	C-T	HET
SBS	Chr10	7881441	G-A	HET
SBS	Chr10	18028758	T-C	HET
SBS	Chr11	13117461	T-C	HET
SBS	Chr11	26130357	T-A	HET
SBS	Chr12	14561136	T-A	HET

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	341352	341367	15
Deletion	Chr5	1165072	1165078	6
Deletion	Chr9	2292907	2292908	1
Deletion	Chr2	2989712	2989716	4	LOC_Os02g05990
Deletion	Chr5	8753358	8753378	20
Deletion	Chr8	9828831	9828861	30
Deletion	Chr4	12966532	12966533	1
Deletion	Chr5	15070539	15070542	3
Deletion	Chr6	19399605	19399607	2
Deletion	Chr1	23120001	23198000	77999	12
Deletion	Chr8	23497707	23497715	8
Deletion	Chr1	24559099	24559103	4
Deletion	Chr5	26001038	26001039	1
Deletion	Chr6	27114796	27114798	2
Deletion	Chr5	29913765	29913766	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr9	15438582	15438583	2	LOC_Os09g25740
Insertion	Chr4	9331355	9331355	1
Insertion	Chr4	12265757	12265757	1
Insertion	Chr6	10672860	10672860	1
Insertion	Chr11	18678519	18678520	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	23120975	23224972	2
Inversion	Chr1	23198544	23224982	2

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	730964	Chr11	690973
Translocation	Chr6	7521744	Chr3	25342952	2
Translocation	Chr12	14851523	Chr6	10648005
Translocation	Chr8	16707233	Chr3	18172603	LOC_Os08g27360
Translocation	Chr9	18185386	Chr1	10303163	LOC_Os09g29910

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