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| Mutant Information |
|---|
| Mutant Name | FN3418-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3418-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 18707270 | C-G | HET | ||
| SBS | Chr1 | 27810291 | T-A | Homo | ||
| SBS | Chr1 | 30658494 | A-G | HET | ||
| SBS | Chr10 | 11247468 | C-T | HET | ||
| SBS | Chr10 | 16095248 | A-G | HET | ||
| SBS | Chr10 | 16679084 | T-A | HET | ||
| SBS | Chr10 | 5231055 | G-A | HET | ||
| SBS | Chr10 | 5231056 | T-C | HET | ||
| SBS | Chr11 | 10747918 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g18890 |
| SBS | Chr12 | 16999033 | C-T | HET | ||
| SBS | Chr12 | 17053268 | C-T | HET | ||
| SBS | Chr12 | 18017541 | G-A | HET | ||
| SBS | Chr12 | 9261239 | A-G | Homo | ||
| SBS | Chr2 | 8715316 | G-A | HET | ||
| SBS | Chr3 | 15257192 | G-T | HET | ||
| SBS | Chr3 | 18808926 | T-A | HET | ||
| SBS | Chr3 | 19499940 | G-A | HET | STOP_GAINED | LOC_Os03g34250 |
| SBS | Chr3 | 27482868 | G-A | HET | ||
| SBS | Chr3 | 34234588 | T-A | HET | ||
| SBS | Chr3 | 6914702 | G-A | Homo | ||
| SBS | Chr4 | 13987784 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g24400 |
| SBS | Chr6 | 25757164 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g42860 |
| SBS | Chr6 | 4684384 | G-A | HET | ||
| SBS | Chr6 | 8676895 | T-A | HET | ||
| SBS | Chr6 | 8945965 | C-A | HET | ||
| SBS | Chr7 | 24714739 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g41240 |
| SBS | Chr8 | 8071013 | A-T | HET | ||
| SBS | Chr9 | 15091573 | T-C | HET | ||
| SBS | Chr9 | 20363463 | G-A | HET |
Deletions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 3880096 | 3880097 | 1 | |
| Deletion | Chr3 | 5207826 | 5207844 | 18 | |
| Deletion | Chr5 | 18680349 | 18680357 | 8 | |
| Deletion | Chr2 | 19420001 | 19572000 | 151999 | 24 |
| Deletion | Chr2 | 19612001 | 20027000 | 414999 | 65 |
| Deletion | Chr5 | 26023099 | 26023111 | 12 | LOC_Os05g44770 |
| Deletion | Chr3 | 31275058 | 31275059 | 1 | |
| Deletion | Chr1 | 38557254 | 38557258 | 4 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 21936603 | 21936603 | 1 | LOC_Os10g40804 |
| Insertion | Chr12 | 11626172 | 11626178 | 7 | |
| Insertion | Chr2 | 9244220 | 9244227 | 8 | |
| Insertion | Chr3 | 20533415 | 20533417 | 3 | |
| Insertion | Chr3 | 30924280 | 30924315 | 36 | |
| Insertion | Chr6 | 29603750 | 29603750 | 1 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 10960762 | 11523818 | LOC_Os09g17910 |
| Inversion | Chr9 | 10960767 | 11523820 | LOC_Os09g17910 |
| Inversion | Chr10 | 13799054 | 13879048 | |
| Inversion | Chr2 | 19275226 | 19314000 | |
| Inversion | Chr2 | 19275240 | 20025561 |
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 1418022 | Chr3 | 32400347 | 2 |
| Translocation | Chr9 | 7415108 | Chr3 | 25826063 | |
| Translocation | Chr11 | 8032334 | Chr6 | 20578863 | 2 |
| Translocation | Chr8 | 8733046 | Chr6 | 22915322 | LOC_Os08g14530 |
| Translocation | Chr10 | 19290775 | Chr5 | 6354791 | |
| Translocation | Chr8 | 20336256 | Chr4 | 2842012 | |
| Translocation | Chr11 | 24365090 | Chr5 | 21278518 | |
| Translocation | Chr11 | 28242508 | Chr3 | 6623276 | LOC_Os11g46990 |
| Translocation | Chr3 | 32400349 | Chr1 | 39420088 | LOC_Os03g56890 |