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Mutant Information

Mutant Name	FN3423-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3423-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7089263	G-A	HET
SBS	Chr1	7201606	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g12950
SBS	Chr1	8473051	C-T	HET
SBS	Chr1	8473052	C-T	HET
SBS	Chr1	30561837	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g53200
SBS	Chr2	10779647	A-T	Homo
SBS	Chr4	9694800	C-A	HET
SBS	Chr4	18241553	T-C	HET
SBS	Chr4	32924586	C-A	HET
SBS	Chr5	5935997	G-A	Homo
SBS	Chr6	11778274	G-A	Homo
SBS	Chr6	11778277	C-A	Homo
SBS	Chr8	22305728	C-T	Homo
SBS	Chr11	1039447	C-T	HET
SBS	Chr11	23816458	G-A	Homo
SBS	Chr11	25230233	G-A	Homo
SBS	Chr12	16925490	T-A	HET
SBS	Chr12	19308119	C-G	Homo

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	3906050	3906054	4	LOC_Os05g07340
Deletion	Chr2	7945912	7945914	2
Deletion	Chr8	11245192	11246187	995	LOC_Os08g18840
Deletion	Chr8	12075098	12075099	1
Deletion	Chr7	12140275	12140276	1
Deletion	Chr9	14195133	14195145	12	LOC_Os09g23820
Deletion	Chr12	15540968	15540969	1
Deletion	Chr2	20241392	20241393	1
Deletion	Chr3	21738777	21738780	3
Deletion	Chr3	24825896	24825900	4	LOC_Os03g44170
Deletion	Chr11	25567192	25567211	19
Deletion	Chr3	27094792	27094794	2
Deletion	Chr5	28737099	28737101	2	LOC_Os05g50140
Deletion	Chr4	34763759	34763780	21

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	18605531	18605531	1
Insertion	Chr10	7673651	7673651	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	5477430	5765695	2
Inversion	Chr3	13460189	13548308
Inversion	Chr3	17241311	17556594
Inversion	Chr3	17241317	17561592
Inversion	Chr9	20040823	20041147

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	3575933	Chr1	6150485
Translocation	Chr11	7327454	Chr1	34448281	2
Translocation	Chr7	9456293	Chr5	4379871	2
Translocation	Chr11	9639721	Chr6	1887437	2
Translocation	Chr4	12377634	Chr1	5765699	2
Translocation	Chr3	13977300	Chr1	18384846	LOC_Os03g24520
Translocation	Chr3	13978163	Chr1	18381553	LOC_Os03g24520
Translocation	Chr11	14431665	Chr4	13241674
Translocation	Chr12	21263282	Chr7	4114990