Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3425-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3425-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12739924 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g22650 |
| SBS | Chr1 | 24743018 | C-T | HET | ||
| SBS | Chr1 | 27649956 | C-T | Homo | ||
| SBS | Chr1 | 3318456 | T-C | HET | ||
| SBS | Chr1 | 5347788 | C-T | HET | ||
| SBS | Chr10 | 17873100 | G-A | HET | ||
| SBS | Chr11 | 10303567 | G-A | HET | ||
| SBS | Chr11 | 13369486 | T-G | HET | ||
| SBS | Chr12 | 10134894 | T-A | HET | ||
| SBS | Chr12 | 23234712 | A-T | HET | ||
| SBS | Chr12 | 24430595 | G-T | HET | ||
| SBS | Chr2 | 163406 | G-A | Homo | ||
| SBS | Chr2 | 26603649 | C-T | HET | ||
| SBS | Chr2 | 32131124 | T-C | HET | ||
| SBS | Chr2 | 5308526 | A-T | HET | ||
| SBS | Chr3 | 1546231 | G-T | HET | ||
| SBS | Chr3 | 1940426 | A-T | HET | ||
| SBS | Chr4 | 27709676 | C-T | Homo | ||
| SBS | Chr4 | 6347005 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g11590 |
| SBS | Chr4 | 9695965 | C-T | HET | ||
| SBS | Chr5 | 20491503 | G-A | HET | ||
| SBS | Chr6 | 16172062 | C-T | Homo | ||
| SBS | Chr6 | 16172063 | C-T | Homo | ||
| SBS | Chr6 | 16275331 | T-C | HET | ||
| SBS | Chr6 | 20388376 | T-C | HET | ||
| SBS | Chr6 | 27955752 | C-T | Homo | ||
| SBS | Chr8 | 13867915 | A-T | Homo | ||
| SBS | Chr8 | 15130623 | G-A | Homo | ||
| SBS | Chr8 | 4786515 | G-A | Homo | ||
| SBS | Chr9 | 2574853 | G-A | HET |
Deletions: 12
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 28462619 | 28462623 | 5 | |
| Insertion | Chr7 | 1308316 | 1308327 | 12 | |
| Insertion | Chr8 | 23461108 | 23461140 | 33 | LOC_Os08g37120 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 486872 | 887116 | |
| Inversion | Chr7 | 486882 | 887140 | |
| Inversion | Chr6 | 19712579 | 20676106 | LOC_Os06g33890 |
| Inversion | Chr6 | 19780153 | 20676098 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 15519059 | Chr2 | 22225444 | |
| Translocation | Chr11 | 19416739 | Chr6 | 19780153 | LOC_Os11g32870 |
| Translocation | Chr11 | 22579387 | Chr8 | 3761939 | LOC_Os11g38070 |