Search Results
Mutant Information |
---|
Mutant Name | FN3426-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3426-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
---|
Single base substitutions: 46
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 11769260 | G-C | HET | ||
SBS | Chr1 | 12942681 | A-G | HET | ||
SBS | Chr1 | 13747342 | A-G | HET | STOP_LOST | LOC_Os01g24390 |
SBS | Chr1 | 16706101 | A-G | HET | ||
SBS | Chr1 | 16778591 | C-T | HET | ||
SBS | Chr1 | 28751326 | C-T | HET | ||
SBS | Chr2 | 15648141 | G-A | Homo | ||
SBS | Chr2 | 23205859 | C-T | HET | ||
SBS | Chr2 | 27899851 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g45800 |
SBS | Chr2 | 31303276 | G-A | HET | ||
SBS | Chr3 | 7861347 | C-G | HET | ||
SBS | Chr3 | 30143063 | A-G | Homo | ||
SBS | Chr3 | 31265836 | G-C | HET | ||
SBS | Chr4 | 6114315 | T-C | Homo | ||
SBS | Chr4 | 12856187 | G-A | Homo | ||
SBS | Chr4 | 14908499 | A-T | Homo | ||
SBS | Chr4 | 23381239 | G-A | Homo | ||
SBS | Chr5 | 5154448 | C-A | HET | ||
SBS | Chr5 | 13432304 | G-A | HET | ||
SBS | Chr5 | 13867050 | C-T | Homo | ||
SBS | Chr6 | 7001240 | C-T | HET | ||
SBS | Chr6 | 12012122 | C-A | HET | ||
SBS | Chr6 | 13196751 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g22690 |
SBS | Chr6 | 14971396 | T-A | HET | ||
SBS | Chr6 | 15160345 | G-A | HET | STOP_GAINED | LOC_Os06g25910 |
SBS | Chr6 | 26945341 | C-T | HET | ||
SBS | Chr7 | 5175005 | G-A | HET | ||
SBS | Chr7 | 5959740 | C-G | HET | ||
SBS | Chr7 | 9996681 | C-T | HET | ||
SBS | Chr7 | 23960585 | T-A | HET | ||
SBS | Chr8 | 1147356 | G-A | HET | ||
SBS | Chr8 | 7170581 | C-T | HET | ||
SBS | Chr8 | 9601011 | G-A | Homo | ||
SBS | Chr8 | 11002016 | G-A | Homo | ||
SBS | Chr8 | 17041758 | G-A | Homo | ||
SBS | Chr8 | 17598255 | G-A | Homo | ||
SBS | Chr8 | 21203175 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g33870 |
SBS | Chr8 | 21757101 | G-A | HET | ||
SBS | Chr8 | 25480274 | A-G | Homo | ||
SBS | Chr8 | 26491491 | T-A | HET | ||
SBS | Chr9 | 15574360 | C-T | HET | ||
SBS | Chr10 | 7534783 | T-A | HET | ||
SBS | Chr12 | 2978397 | T-G | Homo | ||
SBS | Chr12 | 3222682 | A-C | Homo | ||
SBS | Chr12 | 12932499 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g22900 |
SBS | Chr12 | 14688152 | C-T | HET |
Deletions: 16
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr11 | 1365921 | 1365924 | 3 | |
Deletion | Chr4 | 2872949 | 2873059 | 110 | |
Deletion | Chr12 | 4720006 | 4720007 | 1 | |
Deletion | Chr6 | 6817343 | 6817350 | 7 | |
Deletion | Chr5 | 9390192 | 9390198 | 6 | |
Deletion | Chr5 | 11256170 | 11256173 | 3 | LOC_Os05g19380 |
Deletion | Chr5 | 11307187 | 11307196 | 9 | LOC_Os05g19460 |
Deletion | Chr8 | 15790001 | 15859000 | 68999 | 10 |
Deletion | Chr12 | 16466454 | 16466458 | 4 | |
Deletion | Chr5 | 17228032 | 17228040 | 8 | |
Deletion | Chr11 | 19213912 | 19213913 | 1 | |
Deletion | Chr6 | 23617001 | 23629000 | 11999 | 2 |
Deletion | Chr11 | 25055441 | 25056039 | 598 | |
Deletion | Chr7 | 28133199 | 28133203 | 4 | |
Deletion | Chr1 | 29239624 | 29239632 | 8 | |
Deletion | Chr2 | 34833925 | 34833934 | 9 |
Insertions: 8
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr2 | 33351082 | 33351083 | 2 | |
Insertion | Chr7 | 12286567 | 12286569 | 3 | |
Insertion | Chr1 | 41615973 | 41615973 | 1 | |
Insertion | Chr3 | 18407679 | 18407681 | 3 | |
Insertion | Chr4 | 16813497 | 16813567 | 71 | |
Insertion | Chr7 | 17322360 | 17322360 | 1 | |
Insertion | Chr9 | 16204141 | 16204142 | 2 | |
Insertion | Chr12 | 21861348 | 21861351 | 4 | LOC_Os12g35880 |
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr4 | 6345957 | 7191077 | 2 |
Inversion | Chr4 | 6345962 | 7191077 | 2 |
Inversion | Chr4 | 9308631 | 9308889 | LOC_Os04g17010 |
Translocations: 7
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 10540260 | Chr5 | 29777448 | |
Translocation | Chr8 | 12577665 | Chr4 | 2200028 | 2 |
Translocation | Chr12 | 16207505 | Chr3 | 19315244 | 2 |
Translocation | Chr12 | 20935540 | Chr2 | 19190558 | |
Translocation | Chr7 | 25288151 | Chr3 | 10130927 | LOC_Os07g42250 |
Translocation | Chr12 | 27082008 | Chr6 | 8332597 | |
Translocation | Chr12 | 27167969 | Chr6 | 16774720 | 2 |