Search Results
| Mutant Information |
|---|
| Mutant Name | FN3427-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3427-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13965253 | A-G | HET | ||
| SBS | Chr1 | 19552881 | T-A | HET | ||
| SBS | Chr1 | 20173349 | C-G | HET | ||
| SBS | Chr1 | 35550746 | T-C | Homo | ||
| SBS | Chr2 | 165464 | T-G | Homo | ||
| SBS | Chr2 | 7515422 | G-A | HET | ||
| SBS | Chr2 | 22230886 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g36840 |
| SBS | Chr2 | 23306641 | C-T | HET | STOP_GAINED | LOC_Os02g38550 |
| SBS | Chr3 | 13816681 | C-T | HET | ||
| SBS | Chr4 | 1514297 | G-A | HET | ||
| SBS | Chr4 | 10468405 | G-A | HET | ||
| SBS | Chr5 | 11315546 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g19470 |
| SBS | Chr5 | 19346981 | C-A | HET | ||
| SBS | Chr5 | 19346983 | T-A | HET | ||
| SBS | Chr5 | 22329244 | G-A | HET | ||
| SBS | Chr6 | 7267686 | C-T | HET | ||
| SBS | Chr7 | 974586 | A-T | HET | ||
| SBS | Chr7 | 26750738 | T-A | HET | ||
| SBS | Chr7 | 26833401 | T-A | Homo | ||
| SBS | Chr8 | 8401686 | T-A | HET | ||
| SBS | Chr8 | 19584375 | G-A | HET | ||
| SBS | Chr9 | 2369739 | C-T | HET | ||
| SBS | Chr9 | 5703687 | A-G | HET | ||
| SBS | Chr9 | 11035750 | C-G | Homo | ||
| SBS | Chr10 | 1854531 | G-A | Homo | ||
| SBS | Chr10 | 8599076 | G-A | HET | ||
| SBS | Chr10 | 11692510 | C-T | Homo | ||
| SBS | Chr11 | 20193185 | T-C | HET | ||
| SBS | Chr12 | 22612746 | C-T | HET |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 1513614 | 1513615 | 1 | |
| Deletion | Chr8 | 2861746 | 2861770 | 24 | LOC_Os08g05420 |
| Deletion | Chr12 | 10383813 | 10383814 | 1 | LOC_Os12g18060 |
| Deletion | Chr12 | 18710661 | 18710667 | 6 | |
| Deletion | Chr2 | 19846284 | 19846294 | 10 | |
| Deletion | Chr9 | 22821990 | 22821994 | 4 | |
| Deletion | Chr1 | 23823419 | 23823420 | 1 | |
| Deletion | Chr1 | 25231601 | 25231611 | 10 | LOC_Os01g44040 |
| Deletion | Chr1 | 26430136 | 26430137 | 1 | LOC_Os01g46460 |
| Deletion | Chr8 | 27327049 | 27327051 | 2 | |
| Deletion | Chr3 | 32825365 | 32825366 | 1 |
Insertions: 6
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 9736605 | 9844239 | LOC_Os04g17770 |
| Inversion | Chr4 | 9861110 | 10059264 | |
| Inversion | Chr8 | 14040094 | 14040437 | LOC_Os08g23260 |
| Inversion | Chr4 | 25462568 | 25551789 | 2 |
| Inversion | Chr4 | 25462574 | 25551875 | 2 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 4297519 | Chr6 | 26082299 | |
| Translocation | Chr10 | 4297527 | Chr6 | 26082425 | 2 |
| Translocation | Chr9 | 6936771 | Chr1 | 3000539 | 2 |