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| Mutant Information |
|---|
| Mutant Name | FN3430-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3430-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 41
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 22213372 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g39420 |
| SBS | Chr1 | 27226208 | G-A | HET | ||
| SBS | Chr1 | 37667997 | G-A | Homo | ||
| SBS | Chr1 | 8014915 | T-A | HET | ||
| SBS | Chr10 | 16214614 | C-T | HET | ||
| SBS | Chr10 | 19631393 | C-T | HET | ||
| SBS | Chr10 | 7776597 | C-T | HET | ||
| SBS | Chr11 | 13145677 | A-C | Homo | ||
| SBS | Chr11 | 16027296 | G-C | HET | ||
| SBS | Chr11 | 20874100 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g35590 |
| SBS | Chr11 | 7526308 | A-G | HET | ||
| SBS | Chr12 | 23780016 | G-T | HET | ||
| SBS | Chr2 | 31870932 | C-T | HET | ||
| SBS | Chr2 | 7219029 | T-G | Homo | ||
| SBS | Chr3 | 10922828 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g19410 |
| SBS | Chr3 | 12973555 | T-C | HET | ||
| SBS | Chr3 | 20010236 | G-T | HET | ||
| SBS | Chr3 | 21241837 | T-C | HET | ||
| SBS | Chr3 | 23885881 | G-A | HET | ||
| SBS | Chr3 | 31249220 | C-T | HET | ||
| SBS | Chr3 | 5541518 | A-T | HET | ||
| SBS | Chr3 | 9187005 | C-T | HET | ||
| SBS | Chr4 | 2001862 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g04270 |
| SBS | Chr5 | 12798154 | T-G | HET | ||
| SBS | Chr5 | 13299524 | G-A | HET | ||
| SBS | Chr5 | 25087505 | G-A | Homo | ||
| SBS | Chr6 | 19972296 | C-G | HET | ||
| SBS | Chr6 | 7936068 | G-A | Homo | ||
| SBS | Chr7 | 20235210 | C-T | HET | ||
| SBS | Chr7 | 24432133 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g40770 |
| SBS | Chr7 | 25544255 | G-A | HET | ||
| SBS | Chr7 | 7477503 | A-T | Homo | ||
| SBS | Chr8 | 10806723 | G-A | Homo | ||
| SBS | Chr8 | 14023634 | T-G | Homo | ||
| SBS | Chr8 | 17536712 | T-A | Homo | ||
| SBS | Chr8 | 18294746 | A-G | Homo | ||
| SBS | Chr8 | 20810070 | C-T | HET | ||
| SBS | Chr8 | 4338603 | G-C | Homo | ||
| SBS | Chr9 | 12307509 | G-T | HET | ||
| SBS | Chr9 | 16177835 | A-G | HET | ||
| SBS | Chr9 | 18258167 | G-C | HET |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 10502710 | 10502719 | 9 | |
| Deletion | Chr2 | 11856981 | 11856990 | 9 | LOC_Os02g20120 |
| Deletion | Chr11 | 12684213 | 12684214 | 1 | |
| Deletion | Chr11 | 17363318 | 17363339 | 21 | |
| Deletion | Chr11 | 17664140 | 17664141 | 1 | LOC_Os11g30390 |
| Deletion | Chr11 | 20088093 | 20088102 | 9 | LOC_Os11g34290 |
| Deletion | Chr7 | 20163460 | 20163461 | 1 | |
| Deletion | Chr12 | 20958001 | 21230000 | 271999 | 31 |
| Deletion | Chr5 | 22779994 | 22780002 | 8 | |
| Deletion | Chr11 | 23773095 | 23773133 | 38 | LOC_Os11g39880 |
| Deletion | Chr11 | 25364409 | 25364410 | 1 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 23918807 | 23918807 | 1 | |
| Insertion | Chr3 | 4579786 | 4579787 | 2 | |
| Insertion | Chr6 | 22200379 | 22200380 | 2 | |
| Insertion | Chr8 | 23542876 | 23542877 | 2 |
No Inversion
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 4416697 | Chr8 | 18415250 | 2 |
| Translocation | Chr4 | 7872857 | Chr1 | 32572152 | |
| Translocation | Chr7 | 11777384 | Chr2 | 16654924 | |
| Translocation | Chr8 | 15255368 | Chr6 | 14058712 | |
| Translocation | Chr11 | 18164434 | Chr10 | 19652802 | |
| Translocation | Chr11 | 22545953 | Chr2 | 19802229 | |
| Translocation | Chr6 | 30707327 | Chr2 | 31356684 |