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Mutant Information

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9799108	G-A	Homo
SBS	Chr2	22286651	C-G	HET
SBS	Chr2	27849688	T-A	HET
SBS	Chr2	27849689	T-A	HET
SBS	Chr4	6421279	C-A	HET
SBS	Chr4	19221031	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g32050
SBS	Chr5	15978622	A-T	HET
SBS	Chr6	5774459	T-C	HET
SBS	Chr6	8871815	T-A	HET
SBS	Chr6	23739862	C-T	HET
SBS	Chr6	23739867	T-A	HET
SBS	Chr6	27952779	A-T	HET
SBS	Chr7	14532996	C-T	Homo
SBS	Chr7	23047703	T-C	HET
SBS	Chr7	24674166	C-T	HET
SBS	Chr8	9995533	C-T	HET
SBS	Chr8	11711273	C-T	HET
SBS	Chr8	19107687	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g30950
SBS	Chr11	8829629	C-T	HET
SBS	Chr11	27291759	G-A	Homo
SBS	Chr12	22612072	A-G	HET
SBS	Chr12	27468640	G-T	HET

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	4186788	4186796	8
Deletion	Chr12	4350777	4350800	23
Deletion	Chr10	6835678	6835679	1
Deletion	Chr3	8273578	8273583	5	LOC_Os03g15140
Deletion	Chr1	8770262	8770264	2
Deletion	Chr7	11308437	11308438	1
Deletion	Chr7	12229807	12229808	1
Deletion	Chr7	12229819	12229820	1
Deletion	Chr7	15244001	15298000	53999	7
Deletion	Chr6	15430331	15430332	1
Deletion	Chr10	15484897	15484899	2
Deletion	Chr7	20614001	20643000	28999	3
Deletion	Chr5	20705501	20705502	1
Deletion	Chr2	21098586	21098596	10
Deletion	Chr5	29629001	29707000	77999	12
Deletion	Chr5	29892001	29903000	10999	2
Deletion	Chr3	30923803	30923896	93
Deletion	Chr2	32839001	32938000	98999	8

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	34768945	34768945	1
Insertion	Chr1	17442466	17442470	5
Insertion	Chr1	38126198	38126198	1
Insertion	Chr4	10817734	10817734	1
Insertion	Chr4	29933360	29933360	1	LOC_Os04g50172
Insertion	Chr7	12486198	12486199	2
Insertion	Chr10	2805544	2805544	1
Insertion	Chr12	7427385	7427393	9
Insertion	Chr12	11973196	11973196	1
Insertion	Chr12	21982395	21982395	1
Insertion	Chr12	22907764	22907765	2

Inversions: 12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	7555343	8039423
Inversion	Chr8	16491161	16869109	2
Inversion	Chr8	16491172	16869110	2
Inversion	Chr1	16852151	16896536
Inversion	Chr7	20334475	20949490
Inversion	Chr7	20334489	20649584
Inversion	Chr12	22586608	22628593
Inversion	Chr12	22586616	22628606
Inversion	Chr4	25674299	25855814	2
Inversion	Chr5	29627524	29764586	2
Inversion	Chr2	32839446	33068254
Inversion	Chr2	32935703	33068255	LOC_Os02g53770

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2399395	Chr1	32064842	LOC_Os12g05334
Translocation	Chr5	6368147	Chr4	16082232	2
Translocation	Chr9	11544000	Chr3	25613147
Translocation	Chr12	15705885	Chr10	4933671	LOC_Os12g26810
Translocation	Chr11	15952959	Chr7	11854568
Translocation	Chr11	16683666	Chr3	25613097
Translocation	Chr7	21453177	Chr1	15973612
Translocation	Chr11	22974509	Chr2	18690867
Translocation	Chr11	24386912	Chr8	17449526
Translocation	Chr7	27769892	Chr1	29676879
Translocation	Chr8	28412686	Chr1	21301284

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