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| Mutant Information |
|---|
| Mutant Name | FN3443-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3443-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 393477 | A-G | HET | ||
| SBS | Chr11 | 20214647 | C-A | HET | ||
| SBS | Chr11 | 21890032 | T-C | HET | ||
| SBS | Chr12 | 14585570 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g25320 |
| SBS | Chr12 | 179717 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g01320 |
| SBS | Chr12 | 26364371 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os12g42420 |
| SBS | Chr2 | 10165100 | A-G | HET | ||
| SBS | Chr2 | 27041565 | G-A | Homo | ||
| SBS | Chr2 | 27731573 | C-T | HET | ||
| SBS | Chr3 | 23482173 | A-T | Homo | ||
| SBS | Chr3 | 30007015 | C-T | HET | ||
| SBS | Chr3 | 34501826 | T-C | Homo | ||
| SBS | Chr4 | 12556749 | T-A | Homo | ||
| SBS | Chr4 | 14327019 | C-A | Homo | ||
| SBS | Chr4 | 7529436 | A-C | Homo | ||
| SBS | Chr5 | 21605945 | G-A | HET | ||
| SBS | Chr5 | 24349752 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os05g41580 |
| SBS | Chr5 | 2736809 | G-A | HET | ||
| SBS | Chr5 | 28477193 | C-T | HET | ||
| SBS | Chr5 | 5122021 | A-G | HET | ||
| SBS | Chr5 | 5323220 | C-A | HET | ||
| SBS | Chr5 | 5323224 | C-A | HET | ||
| SBS | Chr5 | 7524933 | G-C | HET | ||
| SBS | Chr5 | 771675 | T-C | HET | ||
| SBS | Chr6 | 11413671 | T-A | HET | ||
| SBS | Chr6 | 1329136 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os06g03474 |
| SBS | Chr6 | 26696384 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os06g44250 |
| SBS | Chr6 | 6999484 | G-A | HET | ||
| SBS | Chr6 | 8975041 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os06g15810 |
| SBS | Chr7 | 25603809 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g42750 |
| SBS | Chr8 | 15919229 | G-A | Homo | ||
| SBS | Chr8 | 23314919 | C-T | HET | ||
| SBS | Chr8 | 6515089 | G-T | Homo | ||
| SBS | Chr9 | 14462264 | A-G | HET | ||
| SBS | Chr9 | 8720468 | G-A | HET |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 1780793 | 1780799 | 6 | LOC_Os06g04220 |
| Deletion | Chr5 | 6526692 | 6526693 | 1 | |
| Deletion | Chr5 | 6600705 | 6600706 | 1 | |
| Deletion | Chr8 | 9117387 | 9117388 | 1 | |
| Deletion | Chr12 | 11218849 | 11218853 | 4 | |
| Deletion | Chr9 | 11330001 | 11390000 | 59999 | 8 |
| Deletion | Chr6 | 12408009 | 12408016 | 7 | LOC_Os06g21470 |
| Deletion | Chr12 | 12954375 | 12954376 | 1 | |
| Deletion | Chr12 | 13935849 | 13935883 | 34 | |
| Deletion | Chr8 | 16152132 | 16152150 | 18 | |
| Deletion | Chr4 | 21933955 | 21933957 | 2 | |
| Deletion | Chr9 | 22290166 | 22290179 | 13 | LOC_Os09g38790 |
| Deletion | Chr5 | 26060070 | 26060071 | 1 | |
| Deletion | Chr2 | 27995386 | 27995387 | 1 | LOC_Os02g45950 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 1506963 | 1506963 | 1 | |
| Insertion | Chr3 | 32839658 | 32839658 | 1 | |
| Insertion | Chr5 | 21035650 | 21035650 | 1 | LOC_Os05g35400 |
| Insertion | Chr7 | 1308318 | 1308335 | 18 | |
| Insertion | Chr8 | 6475269 | 6475270 | 2 |
No Inversion
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 16435087 | Chr4 | 7105580 | |
| Translocation | Chr7 | 16827720 | Chr6 | 1211774 | LOC_Os07g28750 |
| Translocation | Chr11 | 26779298 | Chr6 | 27614564 | 2 |
| Translocation | Chr11 | 26779670 | Chr6 | 27614563 | 2 |
| Translocation | Chr11 | 28683193 | Chr7 | 1481182 |