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| Mutant Information |
|---|
| Mutant Name | FN3447-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3447-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 23722048 | T-G | HET | ||
| SBS | Chr1 | 8683424 | A-G | Homo | ||
| SBS | Chr10 | 15972716 | G-A | Homo | ||
| SBS | Chr11 | 17619140 | G-A | HET | ||
| SBS | Chr11 | 23553047 | C-T | HET | ||
| SBS | Chr11 | 28672712 | G-A | HET | ||
| SBS | Chr2 | 25835136 | G-T | HET | ||
| SBS | Chr2 | 34773481 | C-T | HET | ||
| SBS | Chr2 | 7064886 | T-C | HET | ||
| SBS | Chr2 | 9855579 | G-A | HET | ||
| SBS | Chr3 | 22193108 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g39920 |
| SBS | Chr3 | 27312731 | C-T | HET | ||
| SBS | Chr3 | 6350997 | A-G | HET | ||
| SBS | Chr4 | 18080958 | A-G | HET | ||
| SBS | Chr4 | 20090554 | A-C | HET | ||
| SBS | Chr5 | 12145728 | T-G | HET | ||
| SBS | Chr5 | 28099774 | A-G | HET | ||
| SBS | Chr5 | 9580094 | G-A | HET | ||
| SBS | Chr6 | 17407477 | A-G | HET | ||
| SBS | Chr6 | 21109724 | A-G | HET | ||
| SBS | Chr6 | 25573932 | T-A | Homo | ||
| SBS | Chr6 | 4131824 | A-G | Homo | ||
| SBS | Chr7 | 19781353 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os07g33120 |
| SBS | Chr7 | 20800395 | G-A | HET | ||
| SBS | Chr7 | 8253284 | T-C | HET | ||
| SBS | Chr8 | 13861730 | C-G | Homo |
Deletions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 1719116 | 1719117 | 1 | |
| Deletion | Chr6 | 2384368 | 2384370 | 2 | LOC_Os06g05300 |
| Deletion | Chr8 | 3495549 | 3495551 | 2 | |
| Deletion | Chr11 | 4420640 | 4420645 | 5 | |
| Deletion | Chr12 | 12046496 | 12046497 | 1 | |
| Deletion | Chr2 | 16898615 | 16898616 | 1 | |
| Deletion | Chr4 | 27933209 | 27933216 | 7 | |
| Deletion | Chr2 | 34129325 | 34129332 | 7 |
Insertions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 1347425 | 1347433 | 9 | |
| Insertion | Chr1 | 13734473 | 13734475 | 3 | |
| Insertion | Chr10 | 12159040 | 12159063 | 24 | |
| Insertion | Chr11 | 19416435 | 19416436 | 2 | |
| Insertion | Chr3 | 7927151 | 7927183 | 33 | LOC_Os03g14600 |
| Insertion | Chr5 | 29103569 | 29103572 | 4 | |
| Insertion | Chr5 | 29411336 | 29411377 | 42 | |
| Insertion | Chr6 | 3027504 | 3027504 | 1 | |
| Insertion | Chr8 | 12244980 | 12244980 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 1255860 | 1276034 | 2 |
| Inversion | Chr5 | 4611396 | 4688185 | LOC_Os05g08440 |
Translocations: 11
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 749574 | Chr1 | 3761100 | |
| Translocation | Chr3 | 3410104 | Chr2 | 14252686 | LOC_Os03g06710 |
| Translocation | Chr5 | 4611394 | Chr4 | 16196580 | LOC_Os05g08440 |
| Translocation | Chr5 | 4688173 | Chr4 | 16195999 | |
| Translocation | Chr12 | 12883460 | Chr1 | 22198248 | |
| Translocation | Chr12 | 15324622 | Chr7 | 4877598 | LOC_Os12g26270 |
| Translocation | Chr7 | 17002551 | Chr2 | 17757429 | LOC_Os07g28980 |
| Translocation | Chr12 | 18707599 | Chr5 | 12102780 | 2 |
| Translocation | Chr7 | 22918066 | Chr3 | 17572593 | LOC_Os07g38210 |
| Translocation | Chr11 | 23740972 | Chr7 | 24849957 | 2 |
| Translocation | Chr4 | 31439021 | Chr3 | 23957199 |