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| Mutant Information |
|---|
| Mutant Name | FN3450-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3450-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10535980 | A-G | HET | ||
| SBS | Chr1 | 11281384 | G-A | HET | ||
| SBS | Chr1 | 12464112 | G-A | HET | ||
| SBS | Chr1 | 24978454 | G-A | HET | ||
| SBS | Chr1 | 33276601 | C-T | Homo | ||
| SBS | Chr1 | 38625615 | T-G | HET | ||
| SBS | Chr1 | 5431653 | A-T | HET | ||
| SBS | Chr1 | 5995170 | C-T | Homo | ||
| SBS | Chr10 | 8289520 | A-G | HET | ||
| SBS | Chr11 | 23257563 | G-A | HET | ||
| SBS | Chr11 | 4560817 | T-G | HET | ||
| SBS | Chr11 | 9316026 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g16790 |
| SBS | Chr12 | 12411958 | G-T | Homo | ||
| SBS | Chr12 | 20787621 | T-A | Homo | ||
| SBS | Chr12 | 5818251 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g10810 |
| SBS | Chr12 | 8168331 | G-T | Homo | ||
| SBS | Chr12 | 9653127 | G-A | HET | ||
| SBS | Chr2 | 5179060 | C-T | HET | ||
| SBS | Chr2 | 5998587 | C-T | HET | ||
| SBS | Chr3 | 32505176 | A-G | HET | ||
| SBS | Chr4 | 16808729 | T-C | HET | ||
| SBS | Chr4 | 26293214 | C-T | Homo | ||
| SBS | Chr5 | 11067645 | C-T | HET | ||
| SBS | Chr5 | 14146363 | C-T | HET | ||
| SBS | Chr5 | 15928032 | C-T | HET | ||
| SBS | Chr5 | 17476984 | A-G | HET | ||
| SBS | Chr5 | 25817669 | C-T | HET | ||
| SBS | Chr6 | 8479319 | T-C | HET | ||
| SBS | Chr6 | 8700071 | A-T | HET | ||
| SBS | Chr7 | 8798840 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g15260 |
| SBS | Chr8 | 12189695 | C-T | HET | ||
| SBS | Chr8 | 12886518 | C-T | HET | ||
| SBS | Chr8 | 14224083 | A-T | HET | ||
| SBS | Chr9 | 4886230 | A-G | Homo |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 5660 | 5681 | 21 | |
| Deletion | Chr9 | 6240709 | 6240710 | 1 | |
| Deletion | Chr2 | 7832366 | 7832370 | 4 | |
| Deletion | Chr11 | 9213812 | 9213824 | 12 | |
| Deletion | Chr9 | 10312712 | 10312728 | 16 | LOC_Os09g16880 |
| Deletion | Chr10 | 10743649 | 10743650 | 1 | |
| Deletion | Chr3 | 14505254 | 14505256 | 2 | LOC_Os03g25370 |
| Deletion | Chr6 | 25030387 | 25030413 | 26 | |
| Deletion | Chr4 | 25288116 | 25288125 | 9 | LOC_Os04g42730 |
| Deletion | Chr6 | 26733370 | 26733378 | 8 | |
| Deletion | Chr1 | 35576782 | 35576796 | 14 |
Insertions: 5
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 3780785 | 4389279 | 2 |
| Inversion | Chr3 | 3780792 | 4389308 | 2 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 1249671 | Chr1 | 22635124 | 2 |
| Translocation | Chr4 | 1250462 | Chr1 | 23948304 | 2 |
| Translocation | Chr10 | 13367285 | Chr1 | 25286977 | |
| Translocation | Chr12 | 23132351 | Chr2 | 691366 | 2 |