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| Mutant Information |
|---|
| Mutant Name | FN3451-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3451-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 18344134 | A-T | Homo | ||
| SBS | Chr1 | 37173534 | A-G | Homo | ||
| SBS | Chr1 | 6063637 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g11310 |
| SBS | Chr11 | 18103047 | A-C | HET | ||
| SBS | Chr11 | 19404394 | T-A | HET | ||
| SBS | Chr11 | 24173522 | A-C | HET | ||
| SBS | Chr11 | 9150383 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g16530 |
| SBS | Chr12 | 1826825 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g04310 |
| SBS | Chr2 | 11771039 | G-T | HET | ||
| SBS | Chr2 | 13316661 | T-G | HET | ||
| SBS | Chr2 | 13440202 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g22520 |
| SBS | Chr2 | 29691160 | A-T | HET | ||
| SBS | Chr2 | 29735826 | C-A | Homo | ||
| SBS | Chr2 | 9351590 | C-T | HET | ||
| SBS | Chr4 | 1391911 | T-A | Homo | ||
| SBS | Chr4 | 23144813 | C-A | Homo | ||
| SBS | Chr4 | 9285371 | C-T | HET | ||
| SBS | Chr5 | 11861804 | C-T | HET | ||
| SBS | Chr5 | 20452556 | A-G | Homo | ||
| SBS | Chr5 | 22512199 | C-T | HET | ||
| SBS | Chr6 | 7343831 | A-G | HET | ||
| SBS | Chr7 | 10076610 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g17150 |
| SBS | Chr7 | 14276504 | G-T | Homo | ||
| SBS | Chr9 | 827844 | A-T | HET |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 1220827 | 1220828 | 1 | LOC_Os10g02960 |
| Deletion | Chr11 | 2102001 | 2117000 | 14999 | 4 |
| Deletion | Chr4 | 4958227 | 4958531 | 304 | LOC_Os04g09330 |
| Deletion | Chr11 | 5294804 | 5294805 | 1 | |
| Deletion | Chr11 | 11501358 | 11501359 | 1 | |
| Deletion | Chr7 | 15837631 | 15837641 | 10 | |
| Deletion | Chr8 | 22395934 | 22395935 | 1 | LOC_Os08g35540 |
| Deletion | Chr4 | 26314828 | 26314829 | 1 | |
| Deletion | Chr6 | 29175075 | 29175082 | 7 |
Insertions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 18079442 | 18079442 | 1 | |
| Insertion | Chr3 | 26761919 | 26761980 | 62 | |
| Insertion | Chr4 | 7914316 | 7914319 | 4 | |
| Insertion | Chr5 | 4740328 | 4740357 | 30 | LOC_Os05g08660 |
| Insertion | Chr6 | 9599689 | 9599690 | 2 | |
| Insertion | Chr7 | 12283617 | 12283617 | 1 | |
| Insertion | Chr8 | 17293658 | 17293661 | 4 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 10808696 | 11075103 | 2 |
| Inversion | Chr3 | 10808706 | 11075107 | 2 |
| Inversion | Chr4 | 29126152 | 30042807 | LOC_Os04g48840 |
| Inversion | Chr4 | 29126165 | 30042820 | LOC_Os04g48840 |
Translocations: 10
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 539245 | Chr7 | 23435000 | |
| Translocation | Chr7 | 1408002 | Chr4 | 8158712 | 2 |
| Translocation | Chr4 | 1782688 | Chr1 | 37409808 | |
| Translocation | Chr10 | 5484403 | Chr2 | 14658145 | |
| Translocation | Chr4 | 9860824 | Chr1 | 6870393 | |
| Translocation | Chr7 | 12441444 | Chr5 | 722770 | |
| Translocation | Chr11 | 15565931 | Chr7 | 2896009 | 2 |
| Translocation | Chr10 | 18185810 | Chr9 | 1555690 | 2 |
| Translocation | Chr11 | 20051528 | Chr6 | 19235992 | |
| Translocation | Chr12 | 26145427 | Chr11 | 17687373 |