Search Results
| Mutant Information |
|---|
| Mutant Name | FN3454-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3454-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr2 | 4402124 | C-T | Homo | ||
| SBS | Chr2 | 11852838 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os02g20110 |
| SBS | Chr2 | 23670145 | C-T | HET | ||
| SBS | Chr2 | 23853597 | A-G | HET | ||
| SBS | Chr3 | 812023 | G-A | HET | ||
| SBS | Chr3 | 10059490 | G-A | Homo | ||
| SBS | Chr3 | 11036438 | T-A | Homo | ||
| SBS | Chr3 | 25763291 | G-T | HET | STOP_GAINED | LOC_Os03g45650 |
| SBS | Chr4 | 1554848 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g03560 |
| SBS | Chr4 | 10922012 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g19610 |
| SBS | Chr4 | 17021306 | C-T | HET | ||
| SBS | Chr4 | 23874864 | G-A | HET | ||
| SBS | Chr4 | 25346113 | C-A | HET | ||
| SBS | Chr4 | 29608322 | G-T | HET | ||
| SBS | Chr4 | 31431238 | C-T | Homo | ||
| SBS | Chr5 | 4157325 | T-G | HET | ||
| SBS | Chr6 | 1594710 | C-G | HET | ||
| SBS | Chr7 | 6923831 | A-G | HET | ||
| SBS | Chr7 | 8508081 | G-T | HET | ||
| SBS | Chr7 | 8508082 | C-T | HET | ||
| SBS | Chr7 | 8994596 | T-C | HET | ||
| SBS | Chr8 | 16208283 | A-T | HET | ||
| SBS | Chr9 | 3032758 | G-A | HET | ||
| SBS | Chr9 | 3889787 | G-A | HET | ||
| SBS | Chr9 | 13392623 | T-C | Homo | ||
| SBS | Chr9 | 16033820 | T-A | Homo | ||
| SBS | Chr11 | 16993849 | T-C | HET | ||
| SBS | Chr11 | 27361940 | A-T | HET | ||
| SBS | Chr11 | 28843211 | G-T | Homo | ||
| SBS | Chr12 | 11157391 | C-T | Homo | ||
| SBS | Chr12 | 17884885 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g29920 |
| SBS | Chr12 | 26336025 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g42370 |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 5979665 | 5979666 | 1 | |
| Deletion | Chr8 | 8364104 | 8364107 | 3 | |
| Deletion | Chr6 | 13202001 | 13269000 | 66999 | 9 |
| Deletion | Chr6 | 13338597 | 13338598 | 1 | |
| Deletion | Chr2 | 13758543 | 13758544 | 1 | |
| Deletion | Chr7 | 14959981 | 14959983 | 2 | |
| Deletion | Chr6 | 17092247 | 17092252 | 5 | |
| Deletion | Chr12 | 17996187 | 17996188 | 1 | LOC_Os12g30050 |
| Deletion | Chr6 | 22311398 | 22311403 | 5 | |
| Deletion | Chr6 | 23320889 | 23320890 | 1 | |
| Deletion | Chr12 | 26191067 | 26191078 | 11 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 29377951 | 29377952 | 2 | |
| Insertion | Chr11 | 8196451 | 8196451 | 1 | |
| Insertion | Chr12 | 13318573 | 13318573 | 1 |
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 8395675 | 8444474 | 2 |
| Inversion | Chr5 | 8395686 | 8444477 | 2 |
| Inversion | Chr6 | 13201721 | 13293595 | LOC_Os06g22700 |
| Inversion | Chr6 | 13268304 | 13293599 | |
| Inversion | Chr6 | 25726918 | 26201533 | 2 |
| Inversion | Chr6 | 25726928 | 25835003 | 2 |
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 6663744 | Chr4 | 5667069 | LOC_Os11g11990 |
| Translocation | Chr11 | 9146367 | Chr8 | 22116439 | LOC_Os11g16530 |
| Translocation | Chr11 | 9147724 | Chr8 | 22116442 | LOC_Os11g16530 |
| Translocation | Chr9 | 9725072 | Chr6 | 8613918 | 2 |
| Translocation | Chr7 | 11311257 | Chr4 | 31871563 | |
| Translocation | Chr9 | 19197359 | Chr6 | 5268338 | |
| Translocation | Chr12 | 23372421 | Chr4 | 31946245 | 2 |
| Translocation | Chr11 | 23449741 | Chr8 | 16434761 |