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| Mutant Information |
|---|
| Mutant Name | FN3457-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3457-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11255997 | A-G | Homo | ||
| SBS | Chr1 | 12058812 | G-A | Homo | ||
| SBS | Chr1 | 13161859 | C-T | HET | ||
| SBS | Chr1 | 22597536 | T-C | Homo | ||
| SBS | Chr1 | 36911020 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g63640 |
| SBS | Chr10 | 14122353 | C-T | HET | ||
| SBS | Chr11 | 14805201 | C-T | HET | ||
| SBS | Chr11 | 20623664 | G-A | HET | ||
| SBS | Chr11 | 8445858 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g14990 |
| SBS | Chr11 | 8931107 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g16246 |
| SBS | Chr12 | 10326704 | C-T | HET | ||
| SBS | Chr2 | 4229149 | G-C | HET | ||
| SBS | Chr3 | 17627872 | A-G | HET | ||
| SBS | Chr3 | 7150818 | C-A | HET | ||
| SBS | Chr4 | 34218823 | T-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g57520 |
| SBS | Chr5 | 4718167 | G-A | Homo | ||
| SBS | Chr6 | 11046324 | C-T | Homo | ||
| SBS | Chr6 | 13808006 | A-T | HET | ||
| SBS | Chr6 | 15525853 | C-T | Homo | ||
| SBS | Chr6 | 16653825 | G-A | Homo | ||
| SBS | Chr6 | 17574482 | C-G | Homo | ||
| SBS | Chr6 | 20945939 | G-T | HET | ||
| SBS | Chr7 | 22018489 | G-C | HET | ||
| SBS | Chr9 | 13520887 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g22370 |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 405226 | 405227 | 1 | |
| Deletion | Chr1 | 560926 | 560929 | 3 | |
| Deletion | Chr5 | 5723277 | 5723278 | 1 | LOC_Os05g10530 |
| Deletion | Chr3 | 13521716 | 13521724 | 8 | LOC_Os03g23830 |
| Deletion | Chr11 | 15112744 | 15112752 | 8 | |
| Deletion | Chr12 | 16081804 | 16081806 | 2 | LOC_Os12g27350 |
| Deletion | Chr8 | 21922302 | 21922305 | 3 | |
| Deletion | Chr12 | 23534944 | 23534945 | 1 | |
| Deletion | Chr5 | 26144934 | 26144935 | 1 | LOC_Os05g44970 |
Insertions: 8
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 17800302 | 17800619 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 2808295 | Chr1 | 20295503 | |
| Translocation | Chr10 | 5720401 | Chr2 | 24465250 | 2 |
| Translocation | Chr10 | 14392059 | Chr6 | 13904115 | |
| Translocation | Chr12 | 20470107 | Chr2 | 6170575 | LOC_Os12g33950 |
| Translocation | Chr5 | 24622186 | Chr4 | 11340115 | |
| Translocation | Chr11 | 28696498 | Chr3 | 19693471 | 2 |