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Mutant Information

Mutant NameFN3459-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3459-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 24
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr121491507C-THET
SBSChr130246893G-AHomo
SBSChr1012100117A-THET
SBSChr1022973803G-AHET
SBSChr1111082768G-AHET
SBSChr111969074A-THomo
SBSChr1223770926G-AHET
SBSChr122858592C-THET
SBSChr21678364T-CHET
SBSChr28872663C-THomo
SBSChr312457301G-AHomo
SBSChr317322003A-GHETNON_SYNONYMOUS_CODINGLOC_Os03g30370
SBSChr321769889A-THomo
SBSChr323762894G-CHomo
SBSChr324838725C-THET
SBSChr417254891T-CHET
SBSChr425799130C-AHET
SBSChr510129601C-THET
SBSChr516570385A-THomo
SBSChr528088787G-AHomo
SBSChr723520952C-THomo
SBSChr728283428G-AHET
SBSChr76368225C-GHET
SBSChr98472005A-GHETNON_SYNONYMOUS_CODINGLOC_Os09g14340

Deletions: 13
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr9111695611169626
DeletionChr1918192891819302
DeletionChr210074660100746611
DeletionChr110311726103117348
DeletionChr710532119105321256LOC_Os07g17800
DeletionChr1214137706141377071
DeletionChr1118154314181543151
DeletionChr323753883237538874
DeletionChr2239180012393700018999
DeletionChr424802051248020587
DeletionChr8250686062506861812
DeletionChr133020485330204861
DeletionChr134921719349217201

Insertions: 5
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr1616334561633462
InsertionChr1213935481139354811
InsertionChr415278204152782041
InsertionChr712085349120853502
InsertionChr7744987274498721LOC_Os07g12980image

No Inversion

Translocations: 5
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr89990196Chr667682022
TranslocationChr1117971497Chr12638176
TranslocationChr1019651086Chr420045625
TranslocationChr622659671Chr39388489LOC_Os06g38294
TranslocationChr623460932Chr523223187LOC_Os06g39515