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Mutant Information |
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Mutant Name | FN3459-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3459-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 24
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 21491507 | C-T | HET | ||
SBS | Chr1 | 30246893 | G-A | Homo | ||
SBS | Chr10 | 12100117 | A-T | HET | ||
SBS | Chr10 | 22973803 | G-A | HET | ||
SBS | Chr11 | 11082768 | G-A | HET | ||
SBS | Chr11 | 1969074 | A-T | Homo | ||
SBS | Chr12 | 23770926 | G-A | HET | ||
SBS | Chr12 | 2858592 | C-T | HET | ||
SBS | Chr2 | 1678364 | T-C | HET | ||
SBS | Chr2 | 8872663 | C-T | Homo | ||
SBS | Chr3 | 12457301 | G-A | Homo | ||
SBS | Chr3 | 17322003 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g30370 |
SBS | Chr3 | 21769889 | A-T | Homo | ||
SBS | Chr3 | 23762894 | G-C | Homo | ||
SBS | Chr3 | 24838725 | C-T | HET | ||
SBS | Chr4 | 17254891 | T-C | HET | ||
SBS | Chr4 | 25799130 | C-A | HET | ||
SBS | Chr5 | 10129601 | C-T | HET | ||
SBS | Chr5 | 16570385 | A-T | Homo | ||
SBS | Chr5 | 28088787 | G-A | Homo | ||
SBS | Chr7 | 23520952 | C-T | Homo | ||
SBS | Chr7 | 28283428 | G-A | HET | ||
SBS | Chr7 | 6368225 | C-G | HET | ||
SBS | Chr9 | 8472005 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os09g14340 |
Deletions: 13
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr9 | 1116956 | 1116962 | 6 | |
Deletion | Chr1 | 9181928 | 9181930 | 2 | |
Deletion | Chr2 | 10074660 | 10074661 | 1 | |
Deletion | Chr1 | 10311726 | 10311734 | 8 | |
Deletion | Chr7 | 10532119 | 10532125 | 6 | LOC_Os07g17800 |
Deletion | Chr12 | 14137706 | 14137707 | 1 | |
Deletion | Chr11 | 18154314 | 18154315 | 1 | |
Deletion | Chr3 | 23753883 | 23753887 | 4 | |
Deletion | Chr2 | 23918001 | 23937000 | 18999 | |
Deletion | Chr4 | 24802051 | 24802058 | 7 | |
Deletion | Chr8 | 25068606 | 25068618 | 12 | |
Deletion | Chr1 | 33020485 | 33020486 | 1 | |
Deletion | Chr1 | 34921719 | 34921720 | 1 |
Insertions: 5
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr1 | 6163345 | 6163346 | 2 | |
Insertion | Chr12 | 13935481 | 13935481 | 1 | |
Insertion | Chr4 | 15278204 | 15278204 | 1 | |
Insertion | Chr7 | 12085349 | 12085350 | 2 | |
Insertion | Chr7 | 7449872 | 7449872 | 1 | LOC_Os07g12980![]() |
No Inversion
Translocations: 5
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr8 | 9990196 | Chr6 | 6768202 | 2 |
Translocation | Chr11 | 17971497 | Chr1 | 2638176 | |
Translocation | Chr10 | 19651086 | Chr4 | 20045625 | |
Translocation | Chr6 | 22659671 | Chr3 | 9388489 | LOC_Os06g38294 |
Translocation | Chr6 | 23460932 | Chr5 | 23223187 | LOC_Os06g39515 |