Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3465-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3465-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1912245 | T-A | HET | ||
| SBS | Chr1 | 2857976 | C-T | HET | ||
| SBS | Chr1 | 38650684 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g66560 |
| SBS | Chr1 | 7191217 | A-T | HET | ||
| SBS | Chr10 | 14992891 | C-T | Homo | ||
| SBS | Chr12 | 17454520 | G-A | HET | ||
| SBS | Chr12 | 23094333 | C-T | HET | ||
| SBS | Chr12 | 8922609 | G-A | Homo | ||
| SBS | Chr2 | 20212793 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g33910 |
| SBS | Chr2 | 29811538 | G-A | HET | ||
| SBS | Chr2 | 29811539 | C-A | HET | ||
| SBS | Chr2 | 29811540 | A-C | HET | ||
| SBS | Chr2 | 32840279 | A-T | HET | ||
| SBS | Chr3 | 29824896 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g51970 |
| SBS | Chr3 | 3169907 | T-A | HET | ||
| SBS | Chr3 | 7196782 | G-A | HET | ||
| SBS | Chr3 | 9815917 | C-T | HET | ||
| SBS | Chr4 | 12679439 | G-T | Homo | ||
| SBS | Chr4 | 13083421 | T-C | Homo | ||
| SBS | Chr5 | 13084230 | A-T | HET | ||
| SBS | Chr5 | 29634646 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g51670 |
| SBS | Chr6 | 17405002 | C-A | HET | ||
| SBS | Chr6 | 19588574 | C-T | HET | ||
| SBS | Chr7 | 11694573 | T-G | Homo | ||
| SBS | Chr7 | 25285065 | A-G | HET | ||
| SBS | Chr8 | 19170691 | G-A | HET | ||
| SBS | Chr8 | 26570232 | C-A | HET | ||
| SBS | Chr8 | 27539922 | G-T | HET | ||
| SBS | Chr8 | 5670420 | G-A | Homo | ||
| SBS | Chr9 | 10981458 | C-A | HET | ||
| SBS | Chr9 | 10981462 | G-C | HET | ||
| SBS | Chr9 | 14615496 | G-A | HET | ||
| SBS | Chr9 | 16399376 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g26970 |
| SBS | Chr9 | 18219780 | A-G | HET |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 4840123 | 4840125 | 2 | LOC_Os08g08390 |
| Deletion | Chr2 | 5098684 | 5098687 | 3 | LOC_Os02g09870 |
| Deletion | Chr4 | 12052555 | 12052557 | 2 | |
| Deletion | Chr3 | 15307523 | 15307544 | 21 | |
| Deletion | Chr9 | 16507817 | 16507818 | 1 | |
| Deletion | Chr3 | 16585884 | 16585888 | 4 | |
| Deletion | Chr8 | 17398550 | 17398553 | 3 | |
| Deletion | Chr2 | 18924917 | 18924925 | 8 | |
| Deletion | Chr6 | 19603555 | 19603556 | 1 | |
| Deletion | Chr1 | 22713001 | 22726000 | 12999 | LOC_Os01g40250 |
| Deletion | Chr12 | 23370588 | 23370597 | 9 | LOC_Os12g38030 |
| Deletion | Chr4 | 23568965 | 23568982 | 17 | |
| Deletion | Chr8 | 26530719 | 26530736 | 17 | |
| Deletion | Chr11 | 26838105 | 26838110 | 5 | |
| Deletion | Chr2 | 29175906 | 29175909 | 3 | LOC_Os02g47730 |
| Deletion | Chr4 | 31878399 | 31878434 | 35 | |
| Deletion | Chr2 | 35385679 | 35385687 | 8 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 41292887 | 41292892 | 6 | |
| Insertion | Chr4 | 7095517 | 7095520 | 4 | |
| Insertion | Chr6 | 26149637 | 26149639 | 3 |
No Inversion
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 8136537 | Chr3 | 28273912 | 2 |
| Translocation | Chr4 | 13779810 | Chr1 | 42289542 | 2 |