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| Mutant Information |
|---|
| Mutant Name | FN3466-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3466-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1921845 | C-T | HET | ||
| SBS | Chr1 | 21859774 | T-C | HET | ||
| SBS | Chr1 | 29565703 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g51410 |
| SBS | Chr1 | 41106503 | G-A | HET | ||
| SBS | Chr11 | 11742236 | A-G | HET | ||
| SBS | Chr11 | 16959148 | C-A | HET | ||
| SBS | Chr11 | 17259382 | C-G | HET | ||
| SBS | Chr11 | 19286515 | G-A | HET | ||
| SBS | Chr2 | 13817506 | G-C | Homo | ||
| SBS | Chr2 | 19561041 | G-A | HET | ||
| SBS | Chr2 | 27584883 | T-A | HET | ||
| SBS | Chr2 | 28412732 | G-A | HET | ||
| SBS | Chr3 | 23539976 | A-T | Homo | ||
| SBS | Chr3 | 2793864 | G-A | HET | ||
| SBS | Chr3 | 29643569 | A-C | HET | ||
| SBS | Chr3 | 29818291 | G-A | Homo | ||
| SBS | Chr3 | 29819957 | A-T | Homo | ||
| SBS | Chr4 | 25508279 | T-C | Homo | ||
| SBS | Chr5 | 22624466 | T-A | Homo | ||
| SBS | Chr6 | 11834307 | C-T | HET | ||
| SBS | Chr6 | 24377401 | G-A | HET | ||
| SBS | Chr6 | 7009154 | C-G | HET | ||
| SBS | Chr6 | 7009155 | C-T | HET | ||
| SBS | Chr6 | 7288732 | G-A | HET | ||
| SBS | Chr6 | 7811268 | T-A | HET | ||
| SBS | Chr6 | 7811269 | T-A | HET | ||
| SBS | Chr8 | 1763315 | G-C | HET | ||
| SBS | Chr8 | 28427283 | C-T | HET | ||
| SBS | Chr9 | 3240810 | C-G | HET | ||
| SBS | Chr9 | 4790858 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os09g09000 |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 676804 | 676809 | 5 | |
| Deletion | Chr1 | 1819920 | 1819922 | 2 | |
| Deletion | Chr5 | 4004744 | 4004758 | 14 | |
| Deletion | Chr1 | 6066203 | 6066205 | 2 | LOC_Os01g11320 |
| Deletion | Chr5 | 10655570 | 10655571 | 1 | |
| Deletion | Chr6 | 12833262 | 12833275 | 13 | |
| Deletion | Chr10 | 14837239 | 14837244 | 5 | |
| Deletion | Chr12 | 18740724 | 18740727 | 3 | |
| Deletion | Chr9 | 20500145 | 20500146 | 1 | |
| Deletion | Chr11 | 22204997 | 22205002 | 5 | |
| Deletion | Chr4 | 23965139 | 23965173 | 34 | |
| Deletion | Chr2 | 25166684 | 25166686 | 2 | |
| Deletion | Chr1 | 34659525 | 34659529 | 4 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 888242 | 888243 | 2 | |
| Insertion | Chr12 | 16831683 | 16831683 | 1 | |
| Insertion | Chr6 | 13729281 | 13729281 | 1 | |
| Insertion | Chr9 | 6413384 | 6413386 | 3 |
No Inversion
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 1243 | Chr2 | 162 | |
| Translocation | Chr2 | 20742917 | Chr1 | 2919355 | |
| Translocation | Chr10 | 22083396 | Chr2 | 30097330 | 2 |
| Translocation | Chr10 | 22083767 | Chr2 | 30097332 | 2 |
| Translocation | Chr11 | 22542296 | Chr9 | 15589160 | 2 |
| Translocation | Chr8 | 25143101 | Chr4 | 3640797 |