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| Mutant Information |
|---|
| Mutant Name | FN3467-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3467-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1257940 | G-C | Homo | ||
| SBS | Chr1 | 20675065 | G-A | Homo | ||
| SBS | Chr1 | 22121605 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g39310 |
| SBS | Chr1 | 230919 | T-C | Homo | ||
| SBS | Chr1 | 26550688 | C-T | HET | ||
| SBS | Chr1 | 40882336 | A-T | Homo | ||
| SBS | Chr11 | 18467624 | C-T | Homo | ||
| SBS | Chr11 | 3859277 | C-A | HET | ||
| SBS | Chr11 | 8407239 | A-G | Homo | ||
| SBS | Chr12 | 18892097 | T-C | Homo | ||
| SBS | Chr2 | 10812740 | T-C | Homo | ||
| SBS | Chr2 | 19438208 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g32730 |
| SBS | Chr2 | 20096889 | C-T | HET | ||
| SBS | Chr3 | 13453571 | C-T | Homo | ||
| SBS | Chr3 | 20519550 | G-A | Homo | ||
| SBS | Chr4 | 16248425 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g27490 |
| SBS | Chr4 | 17599232 | C-T | HET | ||
| SBS | Chr5 | 10436947 | C-T | HET | ||
| SBS | Chr5 | 19533421 | A-G | HET | ||
| SBS | Chr6 | 12252997 | A-G | HET | ||
| SBS | Chr7 | 23836260 | A-G | HET | ||
| SBS | Chr7 | 28159964 | C-T | HET | ||
| SBS | Chr8 | 10439266 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g17040 |
| SBS | Chr8 | 1293814 | C-A | Homo | ||
| SBS | Chr8 | 17479392 | C-T | HET | ||
| SBS | Chr8 | 4923119 | C-T | HET | ||
| SBS | Chr9 | 12099047 | G-A | HET | ||
| SBS | Chr9 | 13520400 | G-A | HET | ||
| SBS | Chr9 | 14133259 | G-A | HET | ||
| SBS | Chr9 | 4237917 | C-T | HET |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 844862 | 844866 | 4 | |
| Deletion | Chr10 | 1961146 | 1961150 | 4 | |
| Deletion | Chr11 | 3640008 | 3640019 | 11 | |
| Deletion | Chr11 | 4160709 | 4160715 | 6 | |
| Deletion | Chr1 | 5822808 | 5822822 | 14 | |
| Deletion | Chr12 | 10317687 | 10317689 | 2 | |
| Deletion | Chr12 | 10369552 | 10369559 | 7 | |
| Deletion | Chr7 | 10493567 | 10493568 | 1 | |
| Deletion | Chr2 | 10814753 | 10814759 | 6 | |
| Deletion | Chr2 | 12809422 | 12809425 | 3 | |
| Deletion | Chr5 | 19029466 | 19029470 | 4 | LOC_Os05g32544 |
| Deletion | Chr10 | 20347989 | 20347994 | 5 | |
| Deletion | Chr8 | 20780641 | 20780652 | 11 | LOC_Os08g33320 |
| Deletion | Chr8 | 21613993 | 21614004 | 11 | |
| Deletion | Chr1 | 28678492 | 28678493 | 1 | |
| Deletion | Chr3 | 32839971 | 32839980 | 9 | |
| Deletion | Chr1 | 34992001 | 35212000 | 219999 | 36 |
| Deletion | Chr1 | 35216001 | 35340000 | 123999 | 17 |
No Insertion
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 19846962 | 20016658 | 2 |
| Inversion | Chr9 | 19846968 | 20016664 | 2 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 4980433 | Chr4 | 23691158 | 2 |