Search Results
| Mutant Information |
|---|
| Mutant Name | FN3468-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3468-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 2665738 | C-A | HET | ||
| SBS | Chr2 | 3967628 | G-A | Homo | ||
| SBS | Chr2 | 7579923 | C-G | Homo | ||
| SBS | Chr2 | 16679172 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g28170 |
| SBS | Chr3 | 8494314 | C-T | HET | ||
| SBS | Chr3 | 9034279 | T-C | HET | ||
| SBS | Chr3 | 9045843 | A-G | HET | ||
| SBS | Chr3 | 10097707 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g18080 |
| SBS | Chr3 | 10097974 | C-A | Homo | ||
| SBS | Chr3 | 10097975 | G-A | Homo | ||
| SBS | Chr3 | 16446962 | A-G | HET | ||
| SBS | Chr3 | 27838809 | G-A | HET | ||
| SBS | Chr3 | 30988422 | T-C | HET | ||
| SBS | Chr5 | 12932663 | C-T | HET | ||
| SBS | Chr6 | 8368771 | C-A | HET | ||
| SBS | Chr6 | 14631535 | G-A | Homo | ||
| SBS | Chr6 | 16917794 | T-A | Homo | ||
| SBS | Chr6 | 20514146 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g35180 |
| SBS | Chr7 | 10795170 | A-T | Homo | ||
| SBS | Chr8 | 217629 | A-C | Homo | ||
| SBS | Chr8 | 217991 | T-C | Homo | ||
| SBS | Chr8 | 8003613 | G-T | HET | ||
| SBS | Chr8 | 15962325 | G-T | HET | ||
| SBS | Chr9 | 9040576 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g15010 |
| SBS | Chr9 | 16021363 | T-C | HET | ||
| SBS | Chr11 | 3885173 | G-A | HET | ||
| SBS | Chr11 | 6333351 | A-T | HET | ||
| SBS | Chr11 | 6393122 | C-A | HET | ||
| SBS | Chr11 | 7587452 | G-A | HET | ||
| SBS | Chr11 | 15180057 | G-A | Homo | ||
| SBS | Chr11 | 24979554 | A-G | Homo | ||
| SBS | Chr12 | 4130040 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g08100 |
| SBS | Chr12 | 11336664 | T-A | HET | ||
| SBS | Chr12 | 13205184 | G-A | Homo | ||
| SBS | Chr12 | 16445768 | G-C | HET |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 415927 | 415930 | 3 | LOC_Os10g01610 |
| Deletion | Chr4 | 1524001 | 1713000 | 188999 | 24 |
| Deletion | Chr7 | 7333001 | 7724000 | 390999 | 56 |
| Deletion | Chr10 | 9318811 | 9318813 | 2 | |
| Deletion | Chr7 | 9542098 | 9542107 | 9 | |
| Deletion | Chr1 | 14290200 | 14290201 | 1 | |
| Deletion | Chr3 | 15551482 | 15551484 | 2 | |
| Deletion | Chr10 | 16905172 | 16905180 | 8 | |
| Deletion | Chr8 | 22227069 | 22227072 | 3 | |
| Deletion | Chr10 | 22311428 | 22311429 | 1 | |
| Deletion | Chr6 | 27287001 | 27369000 | 81999 | 18 |
| Deletion | Chr6 | 27697382 | 27697439 | 57 | |
| Deletion | Chr3 | 28365415 | 28365424 | 9 | |
| Deletion | Chr3 | 29760159 | 29760163 | 4 | |
| Deletion | Chr6 | 30091626 | 30091630 | 4 | |
| Deletion | Chr3 | 36111370 | 36111378 | 8 | |
| Deletion | Chr1 | 39095564 | 39095565 | 1 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr9 | 1566228 | 1566228 | 1 |
No Inversion
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 22349211 | Chr8 | 248972 |