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Mutant Information

Mutant Name	FN3469-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3469-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 15

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24849602	C-T	HET
SBS	Chr10	22920858	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g42500
SBS	Chr10	258545	G-A	HET
SBS	Chr11	15094704	C-T	HET
SBS	Chr12	20329043	A-C	HET
SBS	Chr2	10108463	G-A	HET
SBS	Chr3	20002278	G-A	HET
SBS	Chr4	15329958	G-A	HET
SBS	Chr4	18730688	C-T	HET	STOP_GAINED	LOC_Os04g31300
SBS	Chr4	32774021	G-T	HET
SBS	Chr4	6651728	G-A	HET
SBS	Chr5	20851516	G-T	HET
SBS	Chr6	23076981	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g38890
SBS	Chr6	28761919	C-T	Homo
SBS	Chr7	21040035	C-T	HET

Deletions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	7501017	7501021	4
Deletion	Chr3	11487828	11487830	2
Deletion	Chr3	17719811	17719828	17
Deletion	Chr7	23354557	23354568	11
Deletion	Chr6	25019092	25019093	1
Deletion	Chr7	25555124	25555125	1
Deletion	Chr6	28737500	28737522	22
Deletion	Chr6	28762928	28762932	4

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	18893420	18893420	1	LOC_Os10g35350
Insertion	Chr3	28389567	28389570	4
Insertion	Chr4	26450357	26450358	2

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	5896992	Chr6	20607249
Translocation	Chr11	22180241	Chr5	16082507