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Mutant Information

Mutant Name	FN3470-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3470-S Alignment File
Seed Availability	No
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 15

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	42660402	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g73640
SBS	Chr11	571116	G-A	HET
SBS	Chr2	19276006	A-T	HET
SBS	Chr2	22962298	G-A	HET
SBS	Chr4	21841012	G-A	HET
SBS	Chr4	21841013	G-A	HET
SBS	Chr4	21841014	G-A	HET
SBS	Chr5	5531429	C-G	HET
SBS	Chr6	2529352	C-G	HET
SBS	Chr7	10906639	C-T	HET
SBS	Chr7	15295758	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g26550
SBS	Chr7	2175257	T-C	HET
SBS	Chr7	430241	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g01720
SBS	Chr7	798984	G-A	HET
SBS	Chr7	798985	G-A	HET

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	513630	513632	2
Deletion	Chr7	792624	792638	14
Deletion	Chr7	4358855	4358864	9
Deletion	Chr7	7616648	7616649	1
Deletion	Chr11	15381799	15381808	9
Deletion	Chr8	15908624	15908625	1
Deletion	Chr10	16011714	16011719	5	LOC_Os10g30740
Deletion	Chr6	16846961	16846962	1	LOC_Os06g29420
Deletion	Chr7	18642001	18714000	71999	7
Deletion	Chr6	21120343	21120346	3
Deletion	Chr11	24026848	24026855	7
Deletion	Chr8	25838001	25849000	10999	3

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	41674776	41674777	2
Insertion	Chr11	17347036	17347037	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	22963531	22965064	LOC_Os03g41300

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	8875925	Chr2	18782950	2
Translocation	Chr6	19284847	Chr5	2589738	2
Translocation	Chr8	25802382	Chr2	32761053	2
Translocation	Chr8	25837946	Chr2	32761052	2