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Mutant Information

Mutant Name	FN3471-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3471-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	37216141	G-A	HET
SBS	Chr10	15772533	C-A	Homo
SBS	Chr10	3967110	G-A	Homo
SBS	Chr11	22300700	G-A	Homo
SBS	Chr11	27010541	C-T	Homo
SBS	Chr11	5754949	A-T	HET
SBS	Chr12	11847516	A-T	HET
SBS	Chr2	12078199	G-A	HET
SBS	Chr2	12078200	G-A	HET
SBS	Chr2	18003648	C-T	HET
SBS	Chr2	6960429	A-G	HET
SBS	Chr2	7674355	C-T	HET
SBS	Chr4	18536814	C-T	Homo
SBS	Chr5	9788842	T-A	Homo
SBS	Chr5	9788843	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g17120
SBS	Chr6	17603546	T-C	Homo
SBS	Chr8	3844620	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g06885
SBS	Chr9	16823806	G-A	Homo
SBS	Chr9	7759525	A-G	Homo

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	2711735	2711736	1
Deletion	Chr11	7744055	7744059	4
Deletion	Chr5	9005024	9005035	11
Deletion	Chr5	9426001	9482000	55999	6
Deletion	Chr5	9492001	9666000	173999	21
Deletion	Chr5	9676001	9789000	112999	16
Deletion	Chr9	10253686	10253687	1	LOC_Os09g16760
Deletion	Chr7	12850911	12850919	8
Deletion	Chr12	14396780	14396782	2
Deletion	Chr8	14458456	14458457	1
Deletion	Chr7	18063979	18063982	3	LOC_Os07g30530
Deletion	Chr10	18856979	18856988	9
Deletion	Chr11	19295995	19295999	4
Deletion	Chr5	20102465	20102474	9
Deletion	Chr9	20626671	20626673	2
Deletion	Chr2	22375565	22375566	1
Deletion	Chr11	23303231	23303240	9
Deletion	Chr12	26139736	26139745	9
Deletion	Chr6	28267429	28267431	2	LOC_Os06g46550

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	22130893	22130922	30
Insertion	Chr6	23088753	23088753	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	32664115	32808658
Inversion	Chr3	32664252	32786177	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	4615886	Chr3	5945872
Translocation	Chr9	13579759	Chr4	32799956
Translocation	Chr4	17874366	Chr2	15005093	LOC_Os04g29960
Translocation	Chr11	22995419	Chr7	21960411