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| Mutant Information |
|---|
| Mutant Name | FN3473-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3473-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12036079 | A-T | HET | ||
| SBS | Chr1 | 29459578 | T-C | HET | ||
| SBS | Chr1 | 29459579 | A-T | HET | ||
| SBS | Chr1 | 29463257 | A-G | HET | ||
| SBS | Chr1 | 29971392 | C-T | HET | ||
| SBS | Chr1 | 32891708 | C-G | HET | ||
| SBS | Chr10 | 1299507 | C-T | HET | ||
| SBS | Chr2 | 24033633 | G-A | Homo | ||
| SBS | Chr2 | 29212364 | G-A | HET | ||
| SBS | Chr3 | 8862765 | A-G | HET | ||
| SBS | Chr4 | 11504482 | A-T | Homo | ||
| SBS | Chr4 | 29784595 | G-A | Homo | ||
| SBS | Chr5 | 16286113 | T-G | HET | ||
| SBS | Chr5 | 19465067 | A-G | HET | ||
| SBS | Chr5 | 21657952 | T-A | HET | ||
| SBS | Chr5 | 7792965 | G-A | HET | ||
| SBS | Chr6 | 8375941 | T-C | Homo | ||
| SBS | Chr8 | 23282768 | G-A | HET | ||
| SBS | Chr8 | 6849669 | C-T | HET | ||
| SBS | Chr9 | 12196932 | C-G | HET | ||
| SBS | Chr9 | 22650334 | G-T | HET | ||
| SBS | Chr9 | 3893065 | G-A | HET | ||
| SBS | Chr9 | 587172 | G-T | HET | ||
| SBS | Chr9 | 587176 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g01850 |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 182317 | 182319 | 2 | LOC_Os08g01274 |
| Deletion | Chr10 | 1989827 | 1989828 | 1 | |
| Deletion | Chr9 | 3081878 | 3081888 | 10 | |
| Deletion | Chr11 | 3354164 | 3354170 | 6 | |
| Deletion | Chr9 | 3892882 | 3892893 | 11 | |
| Deletion | Chr8 | 5479511 | 5479512 | 1 | |
| Deletion | Chr4 | 5766395 | 5766398 | 3 | LOC_Os04g10620 |
| Deletion | Chr6 | 8500742 | 8500743 | 1 | |
| Deletion | Chr8 | 10354573 | 10354578 | 5 | |
| Deletion | Chr4 | 10474086 | 10474091 | 5 | |
| Deletion | Chr6 | 19496810 | 19496811 | 1 | |
| Deletion | Chr11 | 20893322 | 20893323 | 1 | |
| Deletion | Chr8 | 22957229 | 22957230 | 1 | |
| Deletion | Chr2 | 26030059 | 26030061 | 2 | |
| Deletion | Chr3 | 26253597 | 26253603 | 6 | |
| Deletion | Chr3 | 32740478 | 32740480 | 2 | |
| Deletion | Chr1 | 33934297 | 33934314 | 17 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 19688232 | 19688233 | 2 | |
| Insertion | Chr12 | 15267360 | 15267360 | 1 | LOC_Os12g26190 |
| Insertion | Chr2 | 7638956 | 7639035 | 80 | |
| Insertion | Chr6 | 20749227 | 20749229 | 3 | |
| Insertion | Chr8 | 26088156 | 26088162 | 7 | |
| Insertion | Chr8 | 8547068 | 8547068 | 1 |
No Inversion
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 635660 | Chr4 | 24158268 | 2 |
| Translocation | Chr9 | 3129310 | Chr7 | 27056901 | 2 |
| Translocation | Chr9 | 3130273 | Chr7 | 27056904 | 2 |
| Translocation | Chr10 | 8946498 | Chr8 | 15002962 | 2 |